Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plant mitochondrial phylogenomics

ABSTRACT: Angiosperm mitochondrial phylogenomics

PROVIDER: PRJEB33250 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3412410_1.fastq.gz	Fastqsanger.gz
	ERR3412410_2.fastq.gz	Fastqsanger.gz
	ERR3412411_1.fastq.gz	Fastqsanger.gz
	ERR3412411_2.fastq.gz	Fastqsanger.gz
	ERR3412412_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Mitochondrial phylogenomics of swallowtail butterflies (Papilionidae)

Project description:Mitochondrial phylogenomics, the origin of swallowtail butterflies, and the impact of the number of clocks in Bayesian molecular dating

| PRJEB23846 | ENA

Oreochromis phylogenomics

Project description:Oreochromis phylogenomics

| PRJEB77041 | ENA

Gallwasp Phylogenomics

Project description:Phylogenomics of cynipid gallwasps

| PRJEB13424 | ENA

Nepenthes ddRAD phylogenomics

Project description:Nepenthes ddRAD phylogenomics

| PRJEB37794 | ENA

Mitochondrial Phylogenomics of Fagales Provides Insights Into Plant Mitogenome Mosaic Evolution

Project description:Fagales are an order of woody plants and comprise more than 1,100 species, most of which produce economically important timbers, nuts, and fruits. Their nuclear and plastid genomes are well-sequenced and provided valuable resources to study their phylogeny, breeding, resistance, etc. However, little is known about the mitochondrial genomes (mitogenomes), which hinder a full understanding of their genome evolution. In this study, we assembled complete mitogenomes of 23 species, covering five of the seven families of Fagales. These mitogenomes had similar gene sets but varied 2.4 times in size. The mitochondrial genes were highly conserved, and their capacity in phylogeny was challenging. The mitogenomic structure was extremely dynamic, and synteny among species was poor. Further analyses of the Fagales mitogenomes revealed extremely mosaic characteristics, with horizontal transfer (HGT)-like sequences from almost all seed plant taxa and even mitoviruses. The largest mitogenome, Carpinus cordata, did not have large amounts of specific sequences but instead contained a high proportion of sequences homologous to other Fagales. Independent and unequal transfers of third-party DNA, including nuclear genome and other resources, may partially account for the HGT-like fragments and unbalanced size expansions observed in Fagales mitogenomes. Supporting this, a mitochondrial plasmid-like of nuclear origin was found in Carpinus. Overall, we deciphered the last genetic materials of Fagales, and our large-scale analyses provide new insights into plant mitogenome evolution and size variation.

| S-EPMC8558628 | biostudies-literature

Phylogenomics of Acanthamoeba species.

Project description:Phylogenomics of Acanthamoeba species.

| PRJEB7687 | ENA

Phylogenomics Of Pristionchus nemtodes

Project description:Phylogenomics Of Pristionchus nemtodes

| PRJEB22480 | ENA

Open-habitat chat phylogenomics

Project description:Open-habitat chat phylogenomics

| PRJEB58431 | ENA

Arabidopsis lyrata phylogenomics

Project description:Phylogenomics of North American Arabidopsis lyrata subsp. lyrata