Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Detection of structural variation in RPE-1 cell line

PROVIDER: PRJEB33731 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3454550.fastq.gz	Fastqsanger.gz
	ERR3454550_1.fastq.gz	Fastqsanger.gz
	ERR3454550_2.fastq.gz	Fastqsanger.gz
	ERR3454560.fastq.gz	Fastqsanger.gz
	ERR3454560_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 219

Similar Datasets

Project description:Detection of structural variation in RPE-1 cell line

| PRJEB30027 | ENA

Project description:Detection of structural variation in RPE-1 cell line (raw sequence fastq files)

| PRJEB30059 | ENA

Saccharomyces cerevisiae

Project description:Structural variation detection

| PRJDB10435 | ENA

Project description:Pig structural variation detection benchmarking

| PRJNA1091034 | ENA

Project description:Structural Variation detection in Pig using mate-pair sequencing

| PRJNA393920 | ENA

ena-DATASET-DKFZ-IBIOS-28-08-2015-09:49:06:632-229 - samples

Project description:RNA-sequencing data from teh hT-RPE-MycER cell line after MYC activation and after MINCR knock-down in conditions of MYC ON or OFF

| EGAD00001001598 | EGA

MicroRNA expression from ARPE-19 cells: control and PDTC treated.

Project description:The cultured cell line ARPE-19 is frequently employed in studies of rpe function. Here we have identified the microRNAs expressed in RPE cells in the presence and absence of PDTC (pyrrolidine dithiocarbamate), an antioxidant.

2010-07-24 | GSE23107 | GEO

Project description:Haplotype-resolved population-based structural variation detection on linked-read

| PRJNA753653 | ENA

Analysis of chromosomal structual aberratons in NB-4 cell line

Project description:This Hi-C experiment was a part of a research which analyzed chromosomal structural aberrations in hematological malignancies. First, the author conducted comprehensive detection of fusion transcripts in RNA-seq data of DSMZ’s 99 cell lines, and then picked up cell lines with characteristic complex karyotype. NB-4 cell line is one of them, which shows characteristic fusion cluster in 8q24 region in the fusion detection step. This Hi-C experiment revealed amplifications of MYC, PVT1, and CCDC26 in 8q24 region. Additionally, several structural aberrations were found by scanning the whole genome.

2024-06-15 | GSE235154 | GEO

Homo sapiens

Project description:RPE-1 human cell line Raw sequence reads

| PRJNA408301 | ENA