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Identifying crossover locations in Arabidopsis thaliana wild type Col x CLC, msh2 Col x CLC and msh2 Col x Ler F2 populations using genotyping by sequencing.

ABSTRACT: Identifying crossover locations in Arabidopsis thaliana wild type Col x CLC, msh2 Col x CLC and msh2 Col x Ler F2 populations using genotyping by sequencing.

PROVIDER: PRJEB34041 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR3484490_1.fastq.gz	Fastqsanger.gz
	ERR3484490_2.fastq.gz	Fastqsanger.gz
	ERR3484500_1.fastq.gz	Fastqsanger.gz
	ERR3484500_2.fastq.gz	Fastqsanger.gz
	ERR3484510_1.fastq.gz	Fastqsanger.gz

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Identifying crossover locations in Arabidopsis thaliana wild type Col x CLC, msh2 Col x CLC and msh2 Col x Ler F2 populations using genotyping by sequencing.

Project description:Genomic DNA from 189 wild type Col x CLC, 191 msh2 Col x CLC or 187 msh2 Col x Ler F2 individuals was extracted using CTAB and used to generate sequencing libraries as described (Serra et al 2018 PNAS). Sequencing data was analysed to identify crossovers as previously reported, using the TIGER pipeline (Rowan et al., 2015 G3).

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Identifying crossover locations in an Arabidopsis thaliana Ler x Col/Ler backcross F1 population using genotyping by sequencing for male-specific crossover map

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Identifying crossover locations in an Arabidopsis thaliana Col/Ler x Ler backcross F1 population using genotyping by sequencing for female-specific crossover map

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Identifying crossover locations in an Arabidopsis thaliana Col x Ler F2 population using genotyping by sequencing.

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