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3' RNA-seq of differentiating (brown) mouse subcutaneous SVF cells upon knockdown of Zfp521, Fhl1, or Mxd1

ABSTRACT: 3' RNA-seq of differentiating (brown) mouse subcutaneous SVF cells upon knockdown of Zfp521, Fhl1, or Mxd1

PROVIDER: PRJEB34673 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR3568470.fastq.gz	Fastqsanger.gz
	ERR3568480.fastq.gz	Fastqsanger.gz
	ERR3568490.fastq.gz	Fastqsanger.gz
	ERR3568500.fastq.gz	Fastqsanger.gz
	ERR3568510.fastq.gz	Fastqsanger.gz

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E-MTAB-8343

Project description:3' RNA-seq of differentiating (brown) mouse subcutaneous SVF cells upon knockdown of Zfp521, Fhl1, or Mxd1

2020-01-10 | E-MTAB-8343 | ExpressionAtlas

3' RNA-seq of differentiating (brown) mouse subcutaneous SVF cells upon knockdown of Zfp521, Fhl1, or Mxd1

Project description:White fat browning is a highly variable genetic trait in mice (Guerra et al., 1998). To gain an overview of strain variations in browning capacities, we performed transcriptome analysis of white fat browning in (1) 5 inbred mouse strains (C57BL/6J, 129S6sv/ev, A/J, AKR/J, and SWR/J) with distinct browning propensities in WAT, and (2) F1 hybrids derived from a high (129S6sv/ev) and low browning strain (C57BL/6J) cross. From our analyses, several transcription factors emerged as novel regulators of white fat browning, including the TFs Zfp521, Fhl1, and Mxd1. We further validated the role of these TFs and performed 3' RNA-seq experiments upon their knockdown, in order to characterize their mechanism of action.

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