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Ruminococcus gauvreauii TS7.3-1.1

ABSTRACT: Strain Ruminococcus gauvreauii TS7.3-1.1 (species Ruminococcus gauvreauii) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

PROVIDER: PRJEB3468 | ENA |

REPOSITORIES: ENA

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Ruminococcus gnavus TS7.3-1.1

Project description:Strain Ruminococcus gnavus TS7.3-1.1 (species Ruminococcus gnavus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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Ruminococcus obeum TS7.3-1.1

Project description:Strain Ruminococcus obeum TS7.3-1.1 (species Ruminococcus obeum) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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Ruminococcus sp CCUG 37327 A TS7.3-1.1

Project description:Strain Ruminococcus sp CCUG 37327 A TS7.3-1.1 (species Ruminococcus sp CCUG 37327 A) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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Crossfeeding relationship between Ruminococcus gauvreauii IPLA60001 and Ruminocoides biliarensis IPLA60002

Project description:Little is known about the bacteria that reside in human gallbladder and the mechanisms that allow them to survive within this harsh environmental niche. Furthermore, certain bacterial species are considered to exhibit antagonistic activities whilst others may form mutualistic interactions through, for example, cross-feeding. We isolated two new strains from healthy human bile samples, one belonging to Ruminococcus gauvreauii, of Lachnospiraceae family, and other constituting a new specie in Ruminococcaceae family, named Ruminocoides biliarensis. The two strains differed markedly in their carbohydrate metabolism as R. gauvreauii mainly metabolised sugar alcohols, including inositol, to form acetate as unique fermentation product, and Rc. biliarensis mainly metabolised resistant starches to mainly form formate and acetate as fermentation end products. Both strains exhibited resistance to different bile salts, and the ability to sporulate. Amino acid and vitamin biosynthesis profiles also markedly differed between the two bile isolates. Finally,RNAseq was used to analyse the co-cultures of both isolates, to analyze the activities involved in the possible cross-feeding relationship.

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Project description:Ruminococcus gauvreauii DSM 19829

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Clostridium TS7.3-1.1

Project description:Strain Clostridium TS7.3-1.1 (species Clostridium) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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Bacteroides salyersiae TS7.3-1.1

Project description:Strain Bacteroides salyersiae TS7.3-1.1 (species Bacteroides salyersiae) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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Project description:Strain Subdoligranulum variabile TS7.3-1.1 (species Subdoligranulum variabile) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

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