Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Atacama

ABSTRACT: Tracing elevational changes in microbial life and organic carbon sources in soils of the Atacama Desert

PROVIDER: PRJEB34989 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3606960_1.fastq.gz	Fastqsanger.gz
	ERR3606960_2.fastq.gz	Fastqsanger.gz
	ERR3606970_1.fastq.gz	Fastqsanger.gz
	ERR3606970_2.fastq.gz	Fastqsanger.gz
	ERR3607070.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 58

Similar Datasets

Atacama desert

Project description:Atacama desert Metagenome

| PRJNA429148 | ENA

Atacama desert UFRO

Project description:Atacama desert UFRO Metagenome

| PRJNA549459 | ENA

Metaproteomic of ARADs (Atacama Rover Astrobiology Drilling Studies) field campaign samples as part of the NASA ASTEP project carried out in September 2019.

Project description:Conditions of low organic matter content per gram of soil in the hyperarid core of the Atacama Desert, extreme temperatures and high UV radiation, makes it one of the best terrestrial analogue of Mars and one of the best scenarios for testing instrumentation devoted to in situ planetary exploration. We have remotely and automatically operated the SOLID-LDChip, an antibody microarray-based sensor instrument, as part of a rover payload during the 2019 NASA’s ASTEP ARADS Mars drilling simulating campaign. SOLID was loaded with a robotic arm with samples collected down to 80 cm depth and, after sample analysis with LDChip, sent results to a remote science team, to be validated by “omics” techniques.

2024-05-22 | PXD027518 | Pride

M. sedula transcriptional response under heterotrophic, autotrophic, and mixotrophic growth conditions

2009-11-01 | GSE14978 | GEO

Convergent and divergent responses of the rhizosphere chemistry and bacterial communities to a stress gradient in the Atacama Desert.

Project description:Untargeted analysis of plant and rhizosphere samples from the Atacama Desert.

2023-10-13 | MSV000093102 | MassIVE

Atacama soils

Project description:High-resolution metagenomic study on near-subsurface soils samples from the Salar de Atacama in Chile

| PRJEB24329 | ENA

M. sedula transcriptional response under heterotrophic, autotrophic, and mixotrophic growth conditions

Project description:To study mixotrophy, it is desirable to have an organism capable of growth in the presence and absence of both organic and inorganic carbon sources, as well as organic and inorganic energy sources. Metallosphaera sedula is an extremely thermoacidophilic archaeon which has been shown to grow in the presence of inorganic carbon and energy source supplements (autotrophy), organic carbon and energy source supplements (heterotrophy), and in the presence of organic carbon and inorganic energy source supplements. The recent elucidation of M. sedulaâ??s inorganic carbon fixation cycle and its genome sequence further facilitate its use in mixotrophic studies. In this study, we grow M. sedula heterotrophically in the presence of organic carbon and energy sources (0.1% tryptone), autotrophically in the presence of inorganic carbon and energy sources (H2 + CO2), and â??mixotrophicallyâ?? in the presence of both organic and inorganic carbon and energy sources (0.1% tryptone + H2 + CO2 ) to characterize the nature of mixotrophy exhibited. Two 3 slide loops joined at equivalent conditions (8 slides total) for Mse cells includes 3 conditions tested in duplicate (biological repeats): heterotrophy (H1 and H2), autotrophy (A1 and A2), and mixotrophy (M1 and M2). Half of an RNA sample for one condition was labeled with Cy3 while the other half was labeled with Cy5. The two differently labeled samples were run on different slides. Each probe is spotted on each slide 5 times (5 replicates; spot intensities for all replicates on slide provided in associated raw data file).

2010-06-20 | E-GEOD-14978 | biostudies-arrayexpress

GNPS - Convergent and divergent responses of the rhizosphere chemistry and bacterial communities to a stress gradient in the Atacama Desert.

Project description:Untargeted analysis of plant and rhizosphere samples from the Atacama Desert.

2023-10-13 | MSV000093102 | GNPS

Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris strain SA008.1.07 can use syringic acid as sole organic carbon source anaerobically. Grew all anaerobically in various carbon sources: syringic acid, succinate, and p-hydroxybenzoic acid.

2019-11-25 | GSE135630 | GEO

The symbiotic alga Trebouxia fuels a coherent soil ecosystem on the landscape scale in the Atacama Desert

Project description:Trebouxia Grit Crust in Atacama Desert

| PRJEB72845 | ENA