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Bacteroides thetaiotaomicron TSDA1.8-2.1

ABSTRACT: Strain Bacteroides thetaiotaomicron TSDA1.8-2.1 (species Bacteroides thetaiotaomicron) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

PROVIDER: PRJEB3505 | ENA |

REPOSITORIES: ENA

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Bacteroides thetaiotaomicron TSDA1.8-1.1

Project description:Strain Bacteroides thetaiotaomicron TSDA1.8-1.1 (species Bacteroides thetaiotaomicron) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3503 | ENA

Bacteroides thetaiotaomicron TSDA1.8-1.2

Project description:Strain Bacteroides thetaiotaomicron TSDA1.8-1.2 (species Bacteroides thetaiotaomicron) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3504 | ENA

Bacteroides vulgatus TSDA1.8-2.1

Project description:Strain Bacteroides vulgatus TSDA1.8-2.1 (species Bacteroides vulgatus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3510 | ENA

Butyricimonas virosa TSDA1.8-2.1

Project description:Strain Butyricimonas virosa TSDA1.8-2.1 (species Butyricimonas virosa) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3516 | ENA

Bifidobacterium longum TSDA1.8-2.1

Project description:Strain Bifidobacterium longum TSDA1.8-2.1 (species Bifidobacterium longum) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0, 364, 399, and 484). The species name was assigned by genome clustering.

| PRJEB3513 | ENA

Bacteroides thetaiotaomicron TSDC17.2-2.1

Project description:Strain Bacteroides thetaiotaomicron TSDC17.2-2.1 (species Bacteroides thetaiotaomicron) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 49). The species name was assigned by genome clustering.

| PRJEB3744 | ENA

Bacteroides thetaiotaomicron TSDC19.2-2.1

Project description:Strain Bacteroides thetaiotaomicron TSDC19.2-2.1 (species Bacteroides thetaiotaomicron) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3819 | ENA

Depolymerization of plant cell wall glycans by symbiotic human gut bacteria (Bacteroides thetaiotaomicron)

Project description:Symbiotic bacteria inhabiting the distal human gut have evolved under intense pressure to utilize complex carbohydrates, predominantly plant cell wall glycans abundant in our diets. These substrates are recalcitrant to depolymerization by digestive enzymes encoded in the human genome, but are efficiently targeted by some of the ~103-104 bacterial species that inhabit this niche. These species augment our comparatively narrow carbohydrate digestive capacity by unlocking otherwise unusable sugars and fermenting them into host-absorbable forms, such as short-chain fatty acids. We used phenotype profiling, whole-genome transcriptional analysis and molecular genetic approaches to investigate complex glycan utilization by two fully sequenced and closely related human gut symbionts: Bacteroides thetaiotaomicron and Bacteroides ovatus. Together these species target all of the common glycosidic linkages found in the plant cell wall, as well as host polysaccharides, but each species exhibits a unique ‘glycan niche’: in vitro B. thetaiotaomicron targets plant cell wall pectins in addition to linkages contained in host N- and O-glycans; B. ovatus uniquely targets hemicellulosic polysaccharides along with several pectins, but is deficient in host glycan utilization. Growth of Bacteroides thetaiotaomicron in vitro in minimal medium plus different purified complex glycans. Observation of increased gene expression was used to determine genes that are involved in metabolism of each glycan. Two biological replicates each.

2011-05-01 | E-GEOD-25572 | biostudies-arrayexpress

In vitro transcriptional profiling of Bacteroides thetaiotaomicron in lactose, galactose and human milk oligosaccharides

Project description:Investigation of the overall in vitro response of Bacteroides thetaiotaomicron to human milk oligosaccharides. Comparison with response to MM-lactose and MM-galactose (Analysis performed using as a baseline datasets GSM301635 and GSM301637 corresponding to Bacteroides thetaiotaomicron response in MM-Glucose)

2013-01-01 | GSE26772 | GEO

Characterizing the interactions between a naturally-primed IgA and its conserved Bacteroides thetaiotaomicron species-specific epitope in gnotobiotic mice [RNA-Seq]

Project description:We report the mid-log phase transcriptional profile of the human gut symbiont Bacteroides thetaiotaomicron, grown in the presence of mouse monoclonal IgAs with species- and strain-level specificity (mAb 260.8 and mAb 225.4, respectively). mRNA expression profiling of the type strain of Bacteroides thetaiotaomicron (NC_004663) grown in vitro in the presence of either (i) PBS (carrier control), (ii) mAb 225.4 alone, (iii) mAb 260.8 alone, (iv) an equal combination of mAbs 225.4 and 260.8, or (v) a nonbinding control mouse mAb IgA (JC63.1)

2015-06-29 | E-GEOD-65449 | biostudies-arrayexpress

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