Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Corella inflata tunicate genome

ABSTRACT: Inferring tunicate relationships and the evolution of the tunicate Hox cluster with the genome of Corella inflata

PROVIDER: PRJEB35402 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3668421_1.fastq.gz	Fastqsanger.gz
	ERR3668421_2.fastq.gz	Fastqsanger.gz
	ERR3671410_1.fastq.gz	Fastqsanger.gz
	ERR3671410_2.fastq.gz	Fastqsanger.gz
	ERR3671411_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Glycyrrhiza inflata

Project description:Glycyrrhiza inflata overview

| PRJNA666961 | ENA

Volucella inflata

Project description:Volucella inflata overview

| PRJNA801747 | ENA

Hexamita inflata

Project description:Hexamita inflata overview

| PRJNA793502 | ENA

Poraniopsis inflata

Project description:Poraniopsis inflata Raw sequence reads

| PRJNA1020671 | ENA

Glycyrrhiza inflata

Project description:Glycyrrhiza inflata Raw sequence reads

| PRJNA937392 | ENA

Glycyrrhiza inflata

Project description:Glycyrrhiza inflata Raw sequence reads

| PRJNA604474 | ENA

Glycyrrhiza inflata

Project description:Glycyrrhiza inflata Transcriptome or Gene expression

| PRJNA574093 | ENA

Hexamita inflata

Project description:Hexamita inflata Genome sequencing and assembly

| PRJNA662213 | ENA

Hexamita inflata

Project description:Hexamita inflata Genome sequencing and assembly

| PRJNA662251 | ENA

Revealing impaired pathways in regulatory mutant by high-throughput characterization of Petunia axillaris and Petunia inflata transcriptomes.

Project description:Petunia is an excellent model system, especially for genetic, physiological and molecular studies. Thus far, however, genome-wide expression analysis has been rarely applied because of the lack of sequence information. We applied next-generation sequencing to generate, through de novo read assembly, a large catalogue of transcripts for Petunia axillaris and Petunia inflata. On the basis of the transcriptome of each species, comprehensive microarray chips for gene expression analysis were established and used for the analysis of global- and organ-specific gene expression in both species. In addition, microarray analysis was applied to explore the molecular basis of the seed coat defects in Petunia hybrida mutants, homozygous for a null allele of the AN11 gene, encoding a WDR transcription regulator. Among the transcripts differentially expressed in an11 seeds compared to wild type, many expected targets of AN11 were found but also several interesting new candidates that might play a role in morphogenesis of the seed coat. Our results validate the combination of next-generation sequencing with microarray analyses strategies to identify the transcriptome of two petunia species without previous knowledge of their genome, and to develop comprehensive chips as useful tools for the analysis of gene expression in P. axillaris, P. inflata and P. hybrida.

2012-02-29 | GSE28120 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data