Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Glacial microbiota are hydrologically connected and temporarily variable.

ABSTRACT: Glacial microbiota are hydrologically connected and temporarily variable.

PROVIDER: PRJEB36007 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR3790610_1.fastq.gz	Fastqsanger.gz
	ERR3790610_2.fastq.gz	Fastqsanger.gz
	ERR3790620_1.fastq.gz	Fastqsanger.gz
	ERR3790620_2.fastq.gz	Fastqsanger.gz
	ERR3790630_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 380

Similar Datasets

Connected to Nature

Project description:Gut microbiota and serotonin alter after Connected to nature intervention

| PRJEB34058 | ENA

glacial ecosystem

Project description:glacial ecosystem Raw sequence reads

| PRJNA1081793 | ENA

Functional characterization of microbial communities from glacial ecosystems

Project description:Glaciers are populated by a large number of microorganisms including bacteria, archaea and microeukaryotes. Several factors such as solar radiation, nutrient availability and water content greatly determine the diversity and abundance of these microbial populations, the type of metabolism and the biogeochemical cycles. In order to study their metabolic potentials, samples of glacial ice were taken from several glacial ecosystems. Microorganisms were analyzed by a polyphasic approach that combines a set of -omic techniques: 16S rRNA sequencing, culturomics and metaproteomics. This combination provides key information about diversity and functions of microbial populations, especially in rare habitats. Several whole essential proteins and enzymes related to metabolism and energy production, recombination and translation were found that demonstrate the existence of cellular activity at subzero temperatures.

2023-03-11 | PXD033406 | Pride

Functional characterization of microbial communities from glacial ecosystems

2023-03-11 | PXD033535 | Pride

Tibetan glacial lake water samples

Project description:Tibetan glacial lake water samples Raw sequence reads

| PRJNA993763 | ENA

Microbiota–modulated CART+ enteric neurons autonomously regulate blood glucose

Project description:Microbial density and diversity increase in distal intestinal segments, affecting tissue physiology, metabolism, and function of both the immune and nervous systems. We characterized the influence of the microbiota on murine intrinsic enteric-associated neurons (iEAN). We found that iEAN are functionally adapted to the intestinal segment they occupy, with a stronger microbiota influence on ileal and colonic neurons. Chemogenetic characterization of microbiota-influenced iEAN identified a subset of viscerofugal CART+ neurons, enriched in the ileum and colon, able to modulate feeding and glucose metabolism. Retro- and anterograde tracing revealed that CART+ viscerofugal neurons send axons to the prevertebral ganglia and are poly-synaptically connected to the liver and pancreas. Microbiota depletion led to NLRP6 and Caspase 11-dependent loss of CART+ neurons, and impaired liver-mediated gluconeogenesis. Our results demonstrate a region-specific adaptation of enteric neurons and indicate that iEAN subsets are capable of regulating blood glucose levels independently from the central nervous system.

2020-08-13 | GSE156142 | GEO

Campylobacter isolates variable, Sweden

Project description:Campylobacter isolates variable, Sweden

| PRJEB40817 | ENA

Glacial Lake Microbial Communities

Project description:16S rRNA amplicon study of the microbial communities in Glacial Lake

| PRJEB12903 | ENA

Phenylobacterium sp. LH3H17 isolate:glacial till

Project description:Phenylobacterium sp. LH3H17 isolate:glacial till Genome sequencing

| PRJNA841454 | ENA

HuMiChip analysis of Saliva microbiota

Project description:Human saliva microbiota is phylogenetically divergent among host individuals yet their roles in health and disease are poorly appreciated. We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults. Saliva microbiota in the pilot population featured a vast diversity of functional genes. No significant distinction in gene number or diversity indices was observed between healthy and caries-active microbiota. However, co-presence network analysis of functional genes revealed that caries-active microbiota was more divergent in non-core genes than healthy microbiota, despite both groups exhibited a similar degree of conservation at their respective core genes. Furthermore, functional gene structure of saliva microbiota could potentially distinguish caries-active patients from healthy hosts. Microbial functions such as Diaminopimelate epimerase, Prephenate dehydrogenase, Pyruvate-formate lyase and N-acetylmuramoyl-L-alanine amidase were significantly linked to caries. Therefore, saliva microbiota carried disease-associated functional signatures, which could be potentially exploited for caries diagnosis. The DMFT INDEX (Decayed, Missing, Filled [DMF] teeth index used in dental epidemiology) values are provided for each sample We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults.

2013-08-15 | E-GEOD-49875 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data