Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

WGS analysis of Leptospira serogroup Pomona isolates in Northern Italy

ABSTRACT: WGS Miseq analysis of Leptospira serogroup Pomona genomes circulating in Northern Italy

PROVIDER: PRJEB36553 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4056312_1.fastq.gz	Fastqsanger.gz
	ERR4056312_2.fastq.gz	Fastqsanger.gz
	ERR4056313_1.fastq.gz	Fastqsanger.gz
	ERR4056313_2.fastq.gz	Fastqsanger.gz
	ERR4056314_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Leptospira interrogans serovar Pomona str. Pomona

Project description:Leptospira interrogans serovar Pomona str. Pomona Genome sequencing project

| PRJNA65043 | ENA

Leptospira interrogans serovar Pomona

Project description:Leptospira interrogans serovar Pomona strain Pomona genome sequencing

| PRJNA950359 | ENA

Serological Survey and Molecular Typing Reveal New Leptospira Serogroup Pomona Strains among Pigs of Northern Italy.

Project description:Swine act as both maintenance and incidental hosts of pathogenic Leptospira spp. Here, a serological test was performed on 131,660 pig sera collected between 2002 and 2017 from 4715 farms in Northern Italy. A positivity rate of 13.05% was determined. Australis was the most frequently identified serogroup (77.29%), followed by Pomona (18.47%), Tarassovi (1.51%) and Icterohaemorrhagie (1.40%). Culture isolation and real-time Polymerase chain reaction (PCR) were carried out on 347 kidneys and 470 clinical samples, respectively. Overall, 133 strains were cultured successfully and 43 randomly chosen isolates were identified as serogroup Pomona. Multi-locus sequence typing (MLST) revealed that 41 isolates and 8 DNA extracted from biological samples belonged to sequence type 140. Using a multiple-locus, variable-number tandem repeat analysis, 43 samples produced identical profiles but, after 2014, three new Leptospira interrogans serogroup Pomona genotypes were observed. Interestingly, two isolates showed new MLST profiles and an unclassified identification by monoclonal antibodies. The 16S rRNA gene sequencing clustered them into L. kirschneri species and a core genome MLST analysis revealed an allelic identity of 96% compared with Mozdok strains. Genotyping allowed us to discriminate leptospires and to identify new emerging strains. The accurate identification of infective strains is required for formulating preventive methods and intervention strategies.

| S-EPMC7281294 | biostudies-literature

Catopsilia pomona

Project description:Catopsilia pomona overview

| PRJNA344365 | ENA

Leptospira interrogans serovar Pomona str. UT364

Project description:Leptospira interrogans serovar Pomona str. UT364 Genome sequencing and assembly

| PRJNA74131 | ENA

Leptospira borgpetersenii serovar Pomona str. 200901868

Project description:Leptospira borgpetersenii serovar Pomona str. 200901868 Genome sequencing and assembly

| PRJNA167255 | ENA

Catopsilia pomona

Project description:Catopsilia pomona Genome sequencing and assembly

| PRJNA344293 | ENA

EPIC-Italy at HuGeF

Project description:This Series contains data from 845 participants (188 men and 657 women) in the EPIC-Italy cohort that was produced at the Human Genetics Foundation (HuGeF) in Turin, Italy. At the last follow-up (2010), 424 participants remained cancer-free, 235 had developed primary breast cancer, 166 had developed primary colorectal cancer, and 20 had developed other primary cancers. Anthropometric measurements, and dietary and lifestyle information obtained by questionnaire are also available.

2013-09-20 | GSE51032 | GEO