Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

METHANOBASE_Alaska

ABSTRACT: Bacteria and Archaea biodiversity in Arctic and Subarctic terrestrial ecosystems in Alaska

PROVIDER: PRJEB36732 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4404670_1.fastq.gz	Fastqsanger.gz
	ERR4404670_2.fastq.gz	Fastqsanger.gz
	ERR4404680_1.fastq.gz	Fastqsanger.gz
	ERR4404680_2.fastq.gz	Fastqsanger.gz
	ERR4404690_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 260

Similar Datasets

METHANOBASE_Patagonia

Project description:Bacteria and Archaea biodiversity in terrestrial ecosystems of Chilean Patagonia

| PRJEB36733 | ENA

METHANOBASE_Siberia

Project description:Bacteria and Archaea biodiversity in Arctic terrestrial ecosystems affected by climate change in Northern Siberia

| PRJEB36731 | ENA

The microbial functional diversity in response to warming incubation at Alaska as characterized by GeoChip

Project description:Microbial decomposition of soil organic carbon (SOC) in Arctic permafrost is one of the most important, but poorly understood, factors in determining the greenhouse gas feedback of tundra ecosystems to climate. Here, we examine changes in the structure of microbial communities in an anoxic incubation experiment at either –2 or 8 °C for up to 122 days using both an organic and a mineral soil collected from the Barrow Environmental Observatory in northern Alaska, USA. Soils were characterized for SOC and geochemistry, and GeoChips 5.0 were used to determine microbial community structure and functional genes associated with C availability and Fe(III) reduction.

2016-11-09 | GSE89644 | GEO

Toolik Field Station Arctic Alaska soil metaproteomics

Project description:These metaproteomic datasets are from active layer soil samples collected from the area of Toolik Field Station, Arctic Alaska, USA. These datasets are described and analyzed in the forthcoming paper, "Functional partitioning and vegetational variation among Arctic soil bacteria revealed by metaproteomics."

| MSV000084386 | MassIVE

Transcriptome responses in copepods Calanus glacialis exposed to phenanthrene and benzo[a]pyrene

Project description:The arctic ecosystems are increasingly exposed to pollution particularly from offshore petroleum extraction-related activities. The objective of the study is to map transcriptome responses in copepods of the arctic region in response to PAHs phenanthrene (Phe) and benzo[a]pyrene (BaP) found in crude-oil contaminants.

2021-10-01 | E-MTAB-10911 | biostudies-arrayexpress

Transcriptome responses in copepods Calanus finmarchicus exposed to phenanthrene and benzo[a]pyrene

2021-10-01 | E-MTAB-10917 | biostudies-arrayexpress

Transcriptome responses in copepods Calanus hyperboreus exposed to phenanthrene and benzo[a]pyrene

2021-10-01 | E-MTAB-10918 | biostudies-arrayexpress

Azotobacter vinelandii coculture with Bacillus subtilis in low N

Project description:Biological nitrogen fixation (BNF) is an essential source of new nitrogen for terrestrial ecosystems. The abiotic factors regulating BNF have been extensively studied in various ecosystems and laboratory settings. Despite this, our understanding of the impact of neighbouring bacteria on N2 fixer activity remains limited. Here, we explored this question using a coculture of the free-living diazotroph Azotobacter vinelandii and the non-fixing plant growth-promoting rhizobacteria Bacillus subtilis. We assessed the interaction between the two bacteria under low N availability.

2024-10-15 | PXD056293 | Pride

Transcriptomic response of Nostoc sp. MG11 under desiccation stress

Project description:To identify the mechanisms of the adaptation to terrestrial ecosystems, an RNA-seq based transcriptome analysis was conducted on a desiccation resistant cyanobacterium, Nostoc sp. MG11.

2022-07-14 | GSE207827 | GEO

The marine Bacteroidetes Muricauda sp. MAR_2010_75 digests diatom β-mannan

Project description:The polysaccharide β-mannan, which is common in terrestrial plants but unknown in microalgae, was recently detected during diatom blooms. We identified a β-mannan polysaccharide utilization locus (PUL) in the genome of the marine Flavobacterium Muricauda sp. MAR_2010_75 which resembles PULs in bacteria from diverse ecosystems. Proteomics showed the β-mannan induced translation of 22 proteins encoded within the PUL.

2022-11-24 | PXD033586 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data