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IAphHyp1

ABSTRACT: Aphantopus hyperantus (ringlet butterfly) genome assembly, iAphHyp1

PROVIDER: PRJEB36756 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	CADCXM02.dat.gz	Other
	CADCXM02.fasta.gz	Fasta.gz
	CADCXM02.master.dat	Other

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iAphHyp1

Project description:Aphantopus hyperantus (ringlet butterfly)

| PRJEB36757 | ENA

iAphHyp1 alternate haplotype

Project description:Aphantopus hyperantus (ringlet butterfly) genome assembly, iAphHyp1, alternate haplotype

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ilAphHype2

Project description:Aphantopus hyperantus (ringlet) genome assembly, ilAphHype2

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ilAphHype2 alternate haplotype

Project description:Aphantopus hyperantus (ringlet) genome assembly, ilAphHype2, alternate haplotype

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ilAphHype

Project description:Aphantopus hyperantus (ringlet), genomic and transcriptomic data

| PRJEB43027 | ENA

Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis

Project description:Background: We studied the chromatin accessibility landscsape in wings during butterfly metamorphosis, and investigate which transcription factors might be driving changes in accessibility Methods: We sequencing the Junonia coenia genome, and we studied chromatin accessibility using ATAC seq in multiple stages of wing development in both forewings and hindwings. For sites showing a large change in accessibility, we investigate which motifs are enriched, and correlate this with changes in gene expression of associated transcription factors. We confirm promising candidates with ChIP-seq Results: We find a highly dynamic landscape, with multiple peaks showing a double increase in accessibility throughout development. We show that transcription factor spineless, but not ecdysone receptor, is highly predictive of opening sites Conclusions: This work provides a characterization of the chromatin dynamics of insect wing metamorphosis, identifies novel candidate chromatin remodeling factors in insects, and provides the first genome assembly of the model butterfly Junonia coenia, with gene and cis-regulatory element annotations

2019-04-30 | GSE121541 | GEO

Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis

2019-05-07 | GSE121542 | GEO

Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis

2019-04-30 | GSE121734 | GEO

Papilionoidea

Project description:Butterfly genome assembly

| PRJNA606954 | ENA

De novo transcriptome analysis profiles gene expression in Vanessa cardui wing patterns

Project description:Butterfly wing patterns are an important model for studying the genetic basis of morphological evolution. Here we used RNA-seq expression profiling in the butterfly Vanessa cardui to characterize the transcriptional basis of wing pigmentation. This approach identified numerous candidate genes including known and suspected components of the insect melanin and ommochrome biosynthetic pathways.

2017-05-04 | GSE78119 | GEO

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