Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ONT reads of Beta vulgaris subsp. vulgaris KWS2320

ABSTRACT: ONT reads for the genome sequence assembly of Beta vulgaris subsp. vulgaris (sugar beet) KWS2320

PROVIDER: PRJEB36905 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

ONT reads of Beta vulgaris subsp. vulgaris U2Bv

Project description:ONT reads for the genome sequencing assembly of U2Bv (a single Beta vulgaris F3 plant, BCN tolerant).

| PRJEB37059 | ENA

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris

| PRJDB15461 | ENA

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris Metagenome

| PRJNA167002 | ENA

The first transcriptome analysis of sugar beet in compatible and incompatible interactions with Heterodera schachtii

Project description:Sugar beet (Beta vulgaris subsp. vulgaris) is an economically important crop and provides nearly one third of the global sugar production annually. The beet cyst nematode (BCN), Heterodera schachtii, causes major yield losses in sugar beet worldwide. The most effective and economic approach to control this nematode is growing tolerant or resistant cultivars. To identify candidate genes involved in susceptibility and resistance, the transcriptome of sugar beet and BCN in compatible and incompatible interactions at two time points, was studied using mRNA-seq. In total, 16 cDNA libraries were constructed and 442 691 707raw reads were obtained. In the compatible interaction, many alterations in phytohormone-related genes were detected. The effect of exogenous application of methyl jasmonate and ethephon was therefore investigated and the results revealed significant reduction of J2s infection and female development rates in treated susceptible plants. Our results revealed candidate genes putatively involved in the Hs1pro1-induced resistance, such as genes related to phenylpropanoid pathway, putative R genes and genes encoding F-box proteins, zinc finger and NAC transcription factors, ABC transporters, BURP and CYSTM proteins. Also, the transcriptome of BCN in the infected root samples was analyzed and several nematode effector genes were found. Our study is the first investigation of the transcriptome profile in the compatible and incompatible interactions between sugar beet and BCN.

2020-08-08 | GSE135555 | GEO

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris Genome sequencing

| PRJNA91111 | ENA

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris genome sequencing

| PRJNA1115152 | ENA

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris genome sequencing

| PRJNA1115153 | ENA

Beta vulgaris subsp. vulgaris

Project description:Beta vulgaris subsp. vulgaris genome sequencing