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Bifidobacterium adolescentis TSDC19.1-1.2

ABSTRACT: Strain Bifidobacterium adolescentis TSDC19.1-1.2 (species Bifidobacterium adolescentis) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

PROVIDER: PRJEB3792 | ENA |

REPOSITORIES: ENA

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Bifidobacterium adolescentis TSDC19.1-1.1

Project description:Strain Bifidobacterium adolescentis TSDC19.1-1.1 (species Bifidobacterium adolescentis) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3791 | ENA

Bifidobacterium pseudocatenulatum TSDC19.1-1.2

Project description:Strain Bifidobacterium pseudocatenulatum TSDC19.1-1.2 (species Bifidobacterium pseudocatenulatum) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3795 | ENA

Bifidobacterium adolescentis TSDC17.1-1.2

Project description:Strain Bifidobacterium adolescentis TSDC17.1-1.2 (species Bifidobacterium adolescentis) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 49). The species name was assigned by genome clustering.

| PRJEB3685 | ENA

Parabacteroides distasonis TSDC19.1-1.2

Project description:Strain Parabacteroides distasonis TSDC19.1-1.2 (species Parabacteroides distasonis) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3805 | ENA

Bacteroides fragilis TSDC19.1-1.2

Project description:Strain Bacteroides fragilis TSDC19.1-1.2 (species Bacteroides fragilis) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3785 | ENA

Escherichia coli TSDC19.1-1.2

Project description:Strain Escherichia coli TSDC19.1-1.2 (species Escherichia coli) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3800 | ENA

Odoribacter splanchnicus TSDC19.1-1.2

Project description:Strain Odoribacter splanchnicus TSDC19.1-1.2 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3802 | ENA

Parabacteroides merdae TSDC19.1-1.2

Project description:Strain Parabacteroides merdae TSDC19.1-1.2 (species Parabacteroides merdae) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3809 | ENA

Bacteroides vulgatus TSDC19.1-1.2

Project description:Strain Bacteroides vulgatus TSDC19.1-1.2 (species Bacteroides vulgatus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.

| PRJEB3790 | ENA

Genomic diversity of Bifidobacterium adolescentis group

Project description:Bifidobacteria have been described as a key component of the human gut microbiota, and recently significant efforts have been made to investigate their genome contents and assess the genetic variability at inter- and intra-species level. In the current work we investigated genome diversity among representatives of bifidobacterial species, i.e., Bifidobacterium adolescentis. These analyses were performed with comparative genomic hybridization (CGH) experiments and they revealed the existence of a strictly conserved set of 685 gene families. Furthermore, CGH analyses showed that genetic regions of diversity included mobile elements and putative genomic life-style adaptation islands, such as loci that encode pili and capsular polysaccharides, and genes involved in carbohydrate metabolism. CGH analysis was performed with microarrays that were based on the genome sequences of B. adolescentis ATCC15703 (NC_008618) . A total of 39,249 probes of 35 bp in length were designed using OligoArray 2.1 software. Oligos were synthesized in triplicate on a 2 M-CM-^W 40-k CombiMatrix array (CombiMatrix, Mulkiteo, USA). Replicates were distributed on the chip at random, non-adjacent positions. A set of 74 negative control probes designed on phage and plant sequences was also included on the chip. Seventeen micrograms of purified genomic DNA was labeled with Cy5-ULS using the Kreatech ULS array CGH Labeling kit (Kreatech Diagnostics) according to the supplierM-bM-^@M-^Ys instructions. Hybridization of labeled test DNA to these microarrays was performed according to CombiMatrix protocols. We analysed seven strains belong to B. adolescentis species. Replicates were distributed on the chip at random, non-adjacent positions.

2013-02-06 | E-GEOD-38992 | biostudies-arrayexpress

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