Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CCMP219-genome

ABSTRACT: Chlamydomonas euryale CCMP219 genome sequencing project

PROVIDER: PRJEB38421 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10323300.fastq.gz	Fastqsanger.gz
	ERR10323301.fastq.gz	Fastqsanger.gz
	ERR10323302.fastq.gz	Fastqsanger.gz
	ERR10323303.fastq.gz	Fastqsanger.gz
	ERR10323304_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 14

Similar Datasets

SAG25.89-genome

Project description:Chlamydomonas sp. SAG25.89 genome sequencing project

| PRJEB38422 | ENA

Chlamy genome wide transcription

Project description:Genome-wide Transcriptional Analysis of Flagellar Regeneration in Chlamydomonas reinhardtii Identifies Orthologs of Ciliary Disease Genes Keywords: other

2005-01-17 | GSE2153 | GEO

Project description:Euryale ferox genome sequencing

| PRJNA769560 | ENA

Chlamy genome wide transcription

Project description:Genome-wide Transcriptional Analysis of Flagellar Regeneration in Chlamydomonas reinhardtii Identifies Orthologs of Ciliary Disease Genes

2010-06-10 | E-GEOD-2153 | biostudies-arrayexpress

Small RNA profiling of strains and lifecycle of Chlamydomonas reinhardtii

Project description:High throughput sequencing was used to investigate the production of small RNAs from in Chlamydomonas in different strains and different stages of the life cycle. The association between these and methylation was assessed using genomic sequencing, comparing a sequenced genome with one enriched for methylated DNA sequence by immuno-precipitation.

2012-08-02 | GSE23379 | GEO

Research on genomic test utilizing next generation sequencer for solid tumors and development of the genome database

Project description:Interventions: Genomic test CANCERPLEX-JP OncoGuide NCC oncopanel system FndationONe CDx genome profile GUARDANT360 MSI Analysis System BRACAnalysis Primary outcome(s): Development of genome database Study Design: Single arm Non-randomized

| 2643590 | ecrin-mdr-crc

The Nationwide Cancer Genome Screening Projects for Gastrointestinal Cancer in Japan, Efficient Identification of Actionable Cancer Genome Alterations in Advanced Non-Colorectal Gastrointestinal Cancer (SCRUM-Japan GI Screen 2015-01-Non-CRC)

Project description:Primary outcome(s): Frequency or characteristics of cancer genome alteration

| 2631666 | ecrin-mdr-crc

Small RNA profiling of strains and lifecycle of Chlamydomonas reinhardtii

2012-08-02 | E-GEOD-23379 | biostudies-arrayexpress

The Nationwide Cancer Genome Screening Project for Gastrointestinal Cancer in Japan (SCRUM-Japan GI-SCREEN):Efficient Identification of Actionable Cancer Genome Alterations in Advanced Colorectal Cancer (GI-SCREEN 2013-01)

Project description:Primary outcome(s): Frequency or characteristics of cancer genome alterations such as KRAS minor, BRAF, NRAS, PIK3CA in CRC

| 2631665 | ecrin-mdr-crc

Whole genome transcriptome analysis (RNAseq) identifies genes upregulated during ciliogenesis in Chlamydomonas reinhardtii

Project description:We used pH shock to deflagellate Chlamydomonas and collected samples before pH shock (pre), 3, 10, 30, and 60 min post-deflagellation to look at the genes that are upregulated as Chlamydomonas regrows its flagella. We aligned our data to v5.3 of the Chlamydomonas genome and compared transcript levels post-deflagellation to the pre-deflagellation levels. A gene was considered expressed if the FPKMM value was at least 3. If transcript level increased 2.5 fold following deflagellation, we considered the gene to be upregulated. If the transcript levels decreased 2.5 fold following deflagellation, we considered the gene to be downregulated. In all, we found 10,815 genes to be expressed during our experiment. There were 1875 genes upregulated following deflagellation, 4,392 genes downregulated, and 4,548 genes that did not alter their expression

2013-05-09 | GSE43004 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data