Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Australian Black swan Genome and Transcriptome

ABSTRACT: This study aims to assemble and annotate the Australian Black Swan genome and transcriptome

PROVIDER: PRJEB38769 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Black swan ISOseq Data

Project description:This study provide PacBio Isoseq RNA sequencing data for black swan (Cygnus_atratus) .

| PRJEB38871 | ENA

Black swan ISOseq data

Project description:This study provide data on ISOseq RNA sequencing data for Black swan(Cygnus atratus)

| PRJEB38872 | ENA

Expression data from feathers of the black/red morphs of the Gouldian finches

Project description:Regenerating feathers of the Gouldian finches were collected from heads of moulting individuals from an Australian captive population. Affymetrix microarrays were used to examine gene expression differences between black and red morphs.

2019-03-01 | GSE125295 | GEO

Differential expression of miRNAs inEGF treated SWAN-71 versus untreated control by next generation sequencing

Project description:The goal of this study is to compare miRNAs expressed by EGF treated SWAN-71 cells to miRNAs expressed in untreated control SWAN-71 cells to identify micro RNAs which play a role during EGF-mediated SWAN-71 cell invasion

2019-01-29 | GSE125763 | GEO

Differential expression of miRNAs in HGF treated SWAN-71 versus untreated control by next generation sequencing

Project description:The goal of this study is to compare miRNAs expressed by HGF treated SWAN-71 cells to miRNAs expressed in untreated control SWAN-71 cells to identify micro RNAs which play a role during HGF-mediated SWAN-71 cell invasion

2019-01-29 | GSE125790 | GEO

Differential expression of miRNAs in IFN-gamma treated SWAN-71 versus untreated control by next generation sequencing

Project description:The goal of this study is to compare miRNAs expressed by IFN-gamma treated SWAN-71 cells to miRNAs expressed in untreated control SWAN-71 cells to identify micro RNAs which play a role during IFN-gamma-mediated SWAN-71 cells invasion

2019-01-29 | GSE125789 | GEO

A Comparative Analysis of the Transcriptome of Hypoxia and Inflammation in Swan 71 Human Trophophoblast Cells: Its Implications in Preeclampsia

Project description:Chemical hypoxia by CoCl2 treatment and pro-inflammatory cytokines induced distinct changes in the transcriptome of Swan 71 human trophoblasts.

2011-11-15 | GSE31679 | GEO

A Comparative Analysis of the Transcriptome of Hypoxia and Inflammation in Swan 71 Human Trophophoblast Cells: Its Implications in Preeclampsia

Project description:Chemical hypoxia by CoCl2 treatment and pro-inflammatory cytokines induced distinct changes in the transcriptome of Swan 71 human trophoblasts. Not Paired. Samples were treated with control treatments (PBS) as well as with CoCl2, IL-1β, and TNFα.

2011-11-15 | E-GEOD-31679 | biostudies-arrayexpress

Agilent Microarray of South Australian bread wheat

Project description:Transcriptome of South Australian bread wheat under salt stress

2017-07-02 | E-MTAB-3270 | biostudies-arrayexpress

The swan genome and transcriptome, it is not all black and white.

Project description:BackgroundThe Australian black swan (Cygnus atratus) is an iconic species with contrasting plumage to that of the closely related northern hemisphere white swans. The relative geographic isolation of the black swan may have resulted in a limited immune repertoire and increased susceptibility to infectious diseases, notably infectious diseases from which Australia has been largely shielded. Unlike mallard ducks and the mute swan (Cygnus olor), the black swan is extremely sensitive to highly pathogenic avian influenza. Understanding this susceptibility has been impaired by the absence of any available swan genome and transcriptome information.ResultsHere, we generate the first chromosome-length black and mute swan genomes annotated with transcriptome data, all using long-read based pipelines generated for vertebrate species. We use these genomes and transcriptomes to show that unlike other wild waterfowl, black swans lack an expanded immune gene repertoire, lack a key viral pattern-recognition receptor in endothelial cells and mount a poorly controlled inflammatory response to highly pathogenic avian influenza. We also implicate genetic differences in SLC45A2 gene in the iconic plumage of the black swan.ConclusionTogether, these data suggest that the immune system of the black swan is such that should any avian viral infection become established in its native habitat, the black swan would be in a significant peril.

| S-EPMC9867998 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data