Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

AQUA-AMR

ABSTRACT: Microbiomes and resistomes of surface water in Bangladesh

PROVIDER: PRJEB39306 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4603470_1.fastq.gz	Fastqsanger.gz
	ERR4603470_2.fastq.gz	Fastqsanger.gz
	ERR4603480_1.fastq.gz	Fastqsanger.gz
	ERR4603480_2.fastq.gz	Fastqsanger.gz
	ERR4603490_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

aquatic metagenome

Project description:Bangladesh Surface and Ground Water Metagenomes

| PRJNA260804 | ENA

Project description:South Florida Surface Water Microbiomes

| PRJNA634101 | ENA

Project description:Human, goat, and chicken gut microbiomes and resistomes in urban and rural Bangladesh

| PRJNA678365 | ENA

Project description:Isolation of Bacteriophages from Surface Water of Bangladesh

| PRJNA607441 | ENA

resistomes and microbiomes during carcass decomposition

Project description:resistomes and microbiomes during carcass decomposition

| PRJEB42593 | ENA

Project description:Impact of Water Chlorination of Children's Gut Microbiomes in Bangladesh

| PRJNA706606 | ENA

microbiome of methane hydrate sediments: Hydrate Ridge

Project description:Gas hydrates, also known as clathrates, are cages of ice-like water crystals encasing gas molecules such as methane (CH4). Despite the global importance of gas hydrates, their microbiomes remain mysterious. Microbial cells are physically associated with hydrates, and the taxonomy of these hydrate-associated microbiomes is distinct from non-hydrate-bearing sites. Global 16S rRNA gene surveys show that members of sub-clade JS-1 of the uncultivated bacterial candidate phylum Atribacteria are the dominant taxa in gas hydrates. The Atribacteria phylogeny is highly diverse, suggesting the potential for wide functional variation and niche specialization. Here, we examined the distribution, phylogeny, and metabolic potential of uncultivated Atribacteria in cold, salty, and high-pressure sediments beneath Hydrate Ridge, off the coast of Oregon, USA, using a combination of 16S rRNA gene amplicon, metagenomic, and metaproteomic analysis. Methods were developed to extract bacterial cellular protein from these sediments, as outlined below. Sample Description Three sediments samples were collected from beneath Hydrate Ridge, off the coast of Oregon, USA. Sediments were cored at ODP site 1244 (44°35.1784´N; 125°7.1902´W; 895 m water depth) on the eastern flank of Hydrate Ridge ~3 km northeast of the southern summit on ODP Leg 204 in 2002 and stored at -80°C at the IODP Gulf Coast Repository. E10H5 sediment is from 68.5 meters below sediment surface interface C1H2 sediment is from 2 meters below sediment surface interface. C3H4 sediment is from 21 meters below sediment surface interface.

2020-01-22 | PXD012479 | Pride

Project description:The gut microbiomes and resistomes of acute leukemia patients

| PRJNA1050658 | ENA

Project description:Labor-OME project: Characterizing agricultural microbiomes, resistomes, and mobilomes on the skin surface of swine workers and swine

| PRJNA987158 | ENA

Project description:Effects of drinking water chlorination on childrens intestinal flora and resistomes in Dhaka, Bangladesh: a cluster-randomized controlled trial

| PRJNA726052 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data