Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia/Shigella

ABSTRACT: Proxy upload by EnteroBase (from database Escherichia/Shigella)

PROVIDER: PRJEB39739 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10224061_1.fastq.gz	Fastqsanger.gz
	ERR10224061_2.fastq.gz	Fastqsanger.gz
	ERR10464821_1.fastq.gz	Fastqsanger.gz
	ERR10464821_2.fastq.gz	Fastqsanger.gz
	ERR10464650_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 969

Similar Datasets

Escherichia/Shigella

Project description:Proxy upload by EnteroBase (from database Escherichia/Shigella)

| PRJEB39402 | ENA

Clostridioides

Project description:Proxy upload by EnteroBase (from database Clostridioides)

| PRJEB39741 | ENA

Moraxella

Project description:Proxy upload by EnteroBase (from database Moraxella)

| PRJEB39742 | ENA

Helicobacter

Project description:Proxy upload by EnteroBase (from database Helicobacter)

| PRJEB39744 | ENA

Vibrio

Project description:Proxy upload by EnteroBase (from database Vibrio)

| PRJEB39740 | ENA

EnteroBase Salmonella

Project description:Proxy upload by EnteroBase (from database Salmonella)

| PRJEB39988 | ENA

Clostridioides

Project description:Proxy upload by EnteroBase (from database Clostridioides)

| PRJEB39407 | ENA

Yersinia

Project description:Proxy upload by EnteroBase (from database Yersinia)

| PRJEB39743 | ENA

Salmonella

Project description:Proxy upload by EnteroBase (from database Salmonella)

| PRJEB39002 | ENA

Shigella CGH

Project description:Background Compelling evidence indicates that Shigella species, the etiologic agents of bacillary dysentery, as well as enteroinvasive Escherichia coli, are derived from multiple origins of Escherichia coli and form a single pathovar. To further understand the genome diversity and virulence evolution of Shigella, comparative genomic hybridization microarray analysis was employed to compare the gene content of E. coli K-12 with those of 43 Shigella strains from all serotypes. Results For the 43 strains subjected to CGH microarray analyses, the common backbone of the Shigella genome was estimated to contain more than 1,900 open reading frames, with a mean number of 729 undetectable ORFs. The mosaic distribution of absent regions indicated that insertions and/or deletions have led to the highly diversified genomes of pathogenic strains. Conclusion These results support the hypothesis that by gain and loss of functions, Shigella species became successful human pathogens through convergent evolution from diverse genomic backgrounds. Moreover, we also found many specific differences between different lineages, providing a window into understanding bacterial speciation and taxonomic relationships. Keywords: comparative genomic hybridization

2007-07-01 | GSE5212 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data