Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

WGS of Thai teak

ABSTRACT: Whole genome sequencing of teak (Tectona grandis L. f.) in Thailand

PROVIDER: PRJEB40186 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4566020_1.fastq.gz	Fastqsanger.gz
	ERR4566020_2.fastq.gz	Fastqsanger.gz
	ERR4566280_1.fastq.gz	Fastqsanger.gz
	ERR4566280_2.fastq.gz	Fastqsanger.gz
	ERR4566300_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Tectona grandis cultivar:Teak

Project description:Tectona grandis cultivar:Teak Assembly

| PRJNA362985 | ENA

Tectona grandis cultivar:Teak

Project description:Tectona grandis cultivar:Teak Transcriptome or Gene expression

| PRJNA362989 | ENA

Teak chloroplasts

Project description:Complete genome sequence of teak (Tectona grandis L. f.) and some of its variations

| PRJEB1225 | ENA

Tectona grandis

Project description:Whole genome sequencing of Tectona grandis (Teak)

| PRJNA374940 | ENA

Detached, decaying teak (Tectona grandis Linn.f.) shoot and stem tissues.

Project description:Detached, decaying teak (Tectona grandis Linn.f.) shoot and stem tissues. Metagenome

| PRJNA977825 | ENA

Tectona grandis

Project description:Whole genome sequencing of Tectona grandis (Teak) of 150 samples

| PRJNA1107351 | ENA

WGS of Thai bananas

Project description:Whole genome sequencing of diploid and triploid bananas from Thailand

| PRJEB47412 | ENA

Tectona grandis

Project description:Whole genome sequencing of Tectona grandis

| PRJNA493753 | ENA

Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana

Project description:BACKGROUND: Plants exhibit wide chemical diversity due to the production of specialized metabolites that function as pollinator attractants, defensive compounds, and signaling molecules. Lamiaceae (mints) are known for their chemodiversity and have been cultivated for use as culinary herbs, as well as sources of insect repellents, health-promoting compounds, and fragrance.FINDINGS: We report the chromosome-scale genome assembly of Callicarpa americana L. (American beautyberry), a species within the early-diverging Callicarpoideae clade of Lamiaceae, known for its metallic purple fruits and use as an insect repellent due to its production of terpenoids. Using long-read sequencing and Hi-C scaffolding, we generated a 506.1-Mb assembly spanning 17 pseudomolecules with N50 contig and N50 scaffold sizes of 7.5 and 29.0 Mb, respectively. In all, 32,164 genes were annotated, including 53 candidate terpene synthases and 47 putative clusters of specialized metabolite biosynthetic pathways. Our analyses revealed 3 putative whole-genome duplication events, which, together with local tandem duplications, contributed to gene family expansion of terpene synthases. Kolavenyl diphosphate is a gateway to many of the bioactive terpenoids in C. americana; experimental validation confirmed that CamTPS2 encodes kolavenyl diphosphate synthase. Syntenic analyses with Tectona grandis L. f. (teak), a member of the Tectonoideae clade of Lamiaceae known for exceptionally strong wood resistant to insects, revealed 963 collinear blocks and 21,297 C. americana syntelogs.CONCLUSIONS: Access to the C. americana genome provides a road map for rapid discovery of genes encoding plant-derived agrichemicals and a key resource for understanding the evolution of chemical diversity in Lamiaceae.

2020-12-04 | MTBLS1983 | MetaboLights

Tectona grandis

Project description:Tectona grandis Metagenome

| PRJNA645771 | ENA