Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aegilops_sharonensis_1644_hic

ABSTRACT: Aegilops sharonensis accession 1644 WGS assembly raw data

PROVIDER: PRJEB40322 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4600550_1.fastq.gz	Fastqsanger.gz
	ERR4600550_2.fastq.gz	Fastqsanger.gz
	ERR4600560_1.fastq.gz	Fastqsanger.gz
	ERR4600560_2.fastq.gz	Fastqsanger.gz
	ERR4600570_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 282

Similar Datasets

Project description:Aegilops sharonensis accession 1644 sequence assembly

| PRJEB40049 | ENA

sharonensis1644

Project description:Whole Genome Shotgun Sequencing of Aegilops sharonensis, acc. 1644

| PRJEB4849 | ENA

Aegilops sharonensis

Project description:Aegilops sharonensis overview

| PRJNA244449 | ENA

Aegilops sharonensis

Project description:Agrenseq on Aegilops sharonensis

| PRJEB35211 | ENA

Aegilops sharonensis

Project description:Agrenseq on Aegilops sharonensis

| PRJEB35215 | ENA

Imprinting RNAseq

Project description:Long-term hematopoietic stem cells (HSCs), short-term HSCs and multipotent progenitor cells (MPPs) were isolated from bone marrow of four mouse strains (WT, H19-deletion, Igf1r-deletion, and double-deletion) and expression profiled with RNAseq. The behavior of the transcriptomes, and in particular the imprinted genes, was analyzed to see what might be involved in maintaining quiescence of long-term stem cells, and how H19 and Igf1r affected the expression of imprinted genes. Transcriptional profiling data of the same cells have been deposited in ArrayExpress under accession number E-MTAB-1644 (http://wwwdev.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1644/).

2013-08-12 | E-MTAB-1628 | biostudies-arrayexpress

Whole Genome Sequencing of Tongue cancer samples and cell line

Project description:Whole genome sequencing (WGS) of tongue cancer samples and cell line was performed to identify the fusion gene translocation breakpoint. WGS raw data was aligned to human reference genome (GRCh38.p12) using BWA-MEM (v0.7.17). The BAM files generated were further analysed using SvABA (v1.1.3) tool to identify translocation breakpoints. The translocation breakpoints were annotated using custom scripts, using the reference GENCODE GTF (v30). The fusion breakpoints identified in the SvABA analysis were additionally confirmed using MANTA tool (v1.6.0).

2024-02-17 | E-MTAB-12534 | biostudies-arrayexpress

Sharonensis_rnaSeq

Project description:Transcriptome Sequencing of various Aegilops sharonensis accessions

| PRJEB5340 | ENA

Expression profiles of synthetic wheat lines and their parents during amphidiploidization

Project description:Gene expression levels of newly synthetic triploid wheat (ABD), its chromosome-doubled hexaploid (AABBDD), stable synthetic hexaploid (AABBDD), and their parents, Triticum turgidum (accession KU124, AABB) and Aegilops tauschii (accession KU2074, DD) were compared to understand genome-wide change of gene expressions during the course of amphidiploidization and genome stabilization. Stable synthetic hexaploid which were maintained through self-pollinations for 13 generations using the same combinations of the parents for production of synthetic common wheat.

2014-11-30 | GSE54398 | GEO

Aegilops sharonensis

Project description:Aegilops sharonensis organellar-enriched DNA sequencing, assembly, and comparative genomics

| PRJNA470720 | ENA