Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Magellanic penguins virome

ABSTRACT: Viral metagenomics on fecal samples from Magellanic penguins

PROVIDER: PRJEB40660 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4657880.fastq.gz	Fastqsanger.gz
	ERR4657881.fastq.gz	Fastqsanger.gz
	ERR4657882.fastq.gz	Fastqsanger.gz
	ERR4657883.fastq.gz	Fastqsanger.gz
	ERR4657884.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:Viral metagenomics of pig fecal samples

| PRJEB25026 | ENA

Project description:Viral metagenomics of female chimpanzee fecal samples

| PRJNA826903 | ENA

Wild chimpanzee fecal samples

Project description:Viral metagenomics of wild chimpanzee fecal samples

| PRJNA793855 | ENA

feces metagenome

Project description:Viral Metagenomics of fecal samples of fruit bats

| PRJNA344863 | ENA

Aves

Project description:The fecal samples of Adelie penguins and South polar skuas

| PRJDB17206 | ENA

Project description:fecal samples metagenomics data analysis

| PRJNA909023 | ENA

VIROME OF PEACH TREES IDENTIFIED BY SMALL RNA HTS IN HUNGARY

Project description:Virus elimination is indispensable for the maintenance of stone fruit plantations, because these pathogens can cause serious crop damage and crop losses. Currently we do not possess efficient plant protection methods against viruses therefore prevention has a prominent role. In order to prevent infections, pathogen-free propagation material production and application of effective diagnostic methods have essential role. Our examined peach samples derived from isolator houses and stock nurseries of Fruitculture Research Institute of NARIC. With the help of highly sensitive metagenomic diagnostic methods: such as next generation sequencing of small RNAs, we are able to detect all of the presenting pathogens within our samples. During preparation steps, total RNA was isolated from leaf samples, RNA pools were made from the varieties, and then small RNA libraries were prepared. Sequencing was performed on Illumina platform and we used CLC Genomics Workbench for the bioinformatics evaluation. Results were verified by RT-PCR and Northern-blot. PCR products were cloned into pJET vector and Sanger sequenced. As a result, we detected nectarine stem pitting-associated virus (NSPaV), peach associated luteovirus (PaLV) and also peach latent mosaic viroid (PLMVd) which presence has to be checked regularly. Moreover we proved the incidence of PLMVd and PaLV first time in Hungary. We suspect, that the source of the viral infection might be the propagation material, which was used as a base for the variety collection in this isolator house.

2022-06-29 | GSE130859 | GEO

Viral metagenome

Project description:Viral metagenomic of penguins from Antarctica

| PRJNA555609 | ENA

Mus musculus

Project description:Metagenomics of mice fecal samples Metagenome

| PRJNA935072 | ENA

Diamante Virome Project

Project description:Diamante Lake viral metagenome

| PRJEB30865 | ENA