Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Country can affect gut microbiome and antibiotic resistance genes.

ABSTRACT: Country can affect gut microbiome and antibiotic resistance genes.

PROVIDER: PRJEB41489 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR4870300.fastq.gz	Fastqsanger.gz
	ERR4870310.fastq.gz	Fastqsanger.gz
	ERR4870320.fastq.gz	Fastqsanger.gz
	ERR4870330.fastq.gz	Fastqsanger.gz
	ERR4870340.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Detection of antibiotic resistance genes in human gut microbiota

Project description:We used a DNA microarray chip covering 369 resistance types to investigate the relation of antibiotic resistance gene diversity with humansM-bM-^@M-^Y age. Metagenomic DNA from fecal samples of 123 healthy volunteers of four different age groups, i.e. pre-school Children (CH), School Children (SC), High School Students (HSS) and Adults (AD) were used for hybridization. The results showed that 80 different gene types were recovered from the 123 individuals gut microbiota, among which 25 were present in CH, 37 in SC, 58 in HSS and 72 in AD. Further analysis indicated that antibiotic resistance genes in groups of CH, SC and AD can be independently clustered, and those ones in group HSS are more divergent. The detailed analysis of antibiotic resistance genes in human gut is further described in the paper DNA microarray analysis reveals the antibiotic resistance gene diversity in human gut microbiota is age-related submitted to Sentific Reports The antibiotic resistance gene microarray is custom-designed (Roche NimbleGen), based on a single chip containing 3 internal replicated probe sets of 12 probes per resistance gene, covering the whole 315K 12-plex platform spots.

2014-01-16 | E-GEOD-54070 | biostudies-arrayexpress

Dissemination of antibiotic resistance genes

Project description:Dissemination of antibiotic resistance genes

| PRJEB44153 | ENA

Detection of antibiotic resistance genes in human gut microbiota

Project description:We used a DNA microarray chip covering 369 resistance types to investigate the relation of antibiotic resistance gene diversity with humans’ age. Metagenomic DNA from fecal samples of 123 healthy volunteers of four different age groups, i.e. pre-school Children (CH), School Children (SC), High School Students (HSS) and Adults (AD) were used for hybridization. The results showed that 80 different gene types were recovered from the 123 individuals gut microbiota, among which 25 were present in CH, 37 in SC, 58 in HSS and 72 in AD. Further analysis indicated that antibiotic resistance genes in groups of CH, SC and AD can be independently clustered, and those ones in group HSS are more divergent. The detailed analysis of antibiotic resistance genes in human gut is further described in the paper DNA microarray analysis reveals the antibiotic resistance gene diversity in human gut microbiota is age-related submitted to Sentific Reports

2014-01-16 | GSE54070 | GEO

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq]

Project description:Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection.

2020-03-19 | GSE126901 | GEO

antibiotic resistance genes and aquaculture environment

Project description:antibiotic resistance genes and aquaculture environment

| PRJEB40530 | ENA

Gut Microbiome and Common Antibiotic Resistance Genes

Project description:The Comparison of Gut Microbiome and Common Antibiotic Resistance Genes between Plateau Pika and Plateau Zokor

| PRJEB39107 | ENA

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [human host RNA-seq]

2020-03-19 | GSE114588 | GEO