Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole-genome assembly of a single Formica aquilonia × F. polyctena haploid individual

ABSTRACT: Hybrid Formica aquilonia × F. polyctena genome

PROVIDER: PRJEB41943 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR5383095.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Rapid and predictable genome evolution across three hybrid Formica aquilonia × F. polyctena wood ant populations

Project description:Genome evolution in hybrid Formica aquilonia × F. polyctena ants

| PRJEB55288 | ENA

Formica speciation history

Project description:Whole-genome sequencing data of Formica aquilonia and F. polyctena individuals

| PRJEB51899 | ENA

Formica selysi

Project description:Hybrid zone between Formica selysi and Formica cinerea Raw sequence reads

| PRJNA336636 | ENA

Assembly of a Hybrid Formica aquilonia × F. polyctena Ant Genome From a Haploid Male.

Project description:Formica red wood ants are a keystone species of boreal forest ecosystems and an emerging model system in the study of speciation and hybridization. Here, we performed a standard DNA extraction from a single, field-collected Formica aquilonia × Formica polyctena haploid male and assembled its genome using ~60× of PacBio long reads. After polishing and contaminant removal, the final assembly was 272 Mb (4687 contigs, N50 = 1.16 Mb). Our reference genome contains 98.5% of the core Hymenopteran BUSCOs and was pseudo-scaffolded using the assembly of a related species, F. selysi (28 scaffolds, N50 = 8.49 Mb). Around one-third of the genome consists of repeats, and 17 426 gene models were annotated using both protein and RNAseq data (97.4% BUSCO completeness). This resource is of comparable quality to the few other single individual insect genomes assembled to date and paves the way to genomic studies of admixture in natural populations and comparative genomic approaches in Formica wood ants.

| S-EPMC9270870 | biostudies-literature

Microbiome profiles of Formica polyctena and associated myrmecophilous beetles

Project description:Microbiome profiles of Formica polyctena and associated myrmecophilous beetles

| PRJEB31343 | ENA

Formica podzolica

Project description:Formica podzolica (Formica podzolica), iyForPodz1

| PRJNA1105408 | ENA

Formica podzolica

Project description:Formica podzolica (Formica podzolica) genomic and transcriptomic data

| PRJNA1105409 | ENA

Formica podzolica

Project description:Formica podzolica (Formica podzolica) genome assembly, iyForPodz1, alternate haplotype