Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Neocosmospora spp. associated with dry root rot of citrus in South Africa

ABSTRACT: Neocosmospora spp. associated with dry root rot of citrus in South Africa

PROVIDER: PRJEB42040 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Soil South Africa

Project description:Soil South Africa Raw sequence reads

| PRJNA753313 | ENA

Fusarium and Neocosmospora spp. on Citrus

Project description:Symptomatic Citrus trees reveal a new pathogenic lineage in Fusarium and two new Neocosmospora species

| PRJEB19423 | ENA

Genotyping of 75 individuals from the Afrikaner population of South Africa

Project description:The Afrikaner population of South Africa are the descendants of European colonists who started to colonize the Cape of Good Hope in the 1600s. In the early days of the colony, mixed unions between European males and non-European females gave rise to admixed children who later became incorporated into either the Afrikaner or the “Coloured" populations of South Africa. Differences in ancestry, social class, culture, sex ratio and geographic structure led to distinct characteristic admixture patterns in the Afrikaner and Coloured populations. The Afrikaner population has a predominant European composition, whereas the Coloured population has more diverse ancestries. Genealogical records previously estimated the contribution of non-Europeans into the Afrikaners to be between 5.5%-7.2%. NB two individuals withdrew consent so this data contains only 75 individuals as compared to the 77 cited in the article.

2020-01-28 | E-MTAB-8757 | biostudies-arrayexpress

South Africa sewage

Project description:Metagenomics analysis of sewage for surveillance of antimicrobial resistance in South Africa

| PRJEB70907 | ENA

Neocosmospora and Fusarium spp. in ornamental plants

Project description:Soilborne diseases caused by Fusarium and Neocosmospora spp. on ornamental plants in Italy

| PRJEB26697 | ENA

Characterization of plasmids mediating carbapenem resistance in Klebsiella pneumoniae in Pretoria, South Africa

Project description:The study aimed to characterize plasmids mediating carbepenem resistance in Klebsiella pneumoniae in Pretoria, South Africa. We analysed 56 K. pneumoniae isolates collected from academic hospital around Pretoria. Based on phenotypic and molecular results of these isolates, 6 representative isolates were chosen for further analysis using long reads sequencing platform. We observed multidrug resistant phenotype in all these isolates, including resistance to aminoglycosides, tetracycline, phenicol, fosfomycin, floroquinolones, and beta-lactams antibiotics. The blaOXA-48/181 and blaNDM-1/7 were manily the plasmid-mediated carbapenemases responsible for carbapenem resistance in the K. pneumoniae isolates in these academic hospitals. These carbapenemase genes were mainly associated with plasmid replicon groups IncF, IncL/M, IncA/C, and IncX3. This study showed plasmid-mediated carbapenemase spread of blaOXA and blaNDM genes mediated by conjugative plasmids in Pretoria hospitals.

2019-10-17 | GSE138949 | GEO

paediatric atopic dermatitis in South Africa

Project description:atopic dermatitis in South Africa

| PRJEB76296 | ENA

Clinical Neocosmospora species

Project description:Assigning names to common human and animal pathogens in Neocosmospora

| PRJEB22265 | ENA

Isoniazid resistant TB in South Africa

Project description:Isoniazid resistant TB in South Africa

| PRJEB67660 | ENA

Carbapenem-resistant Klebsiella pneumoniae South Africa

Project description:Carbapenem-resistant Klebsiella pneumoniae South Africa