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IlBlaLact

ABSTRACT: Blastobasis lacticolella (London dowd), genomic and transcriptomic data

PROVIDER: PRJEB42085 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	ERR6002600_1.fastq.gz	Fastqsanger.gz
	ERR6002600_2.fastq.gz	Fastqsanger.gz
	ERR6002601_1.fastq.gz	Fastqsanger.gz
	ERR6002601_2.fastq.gz	Fastqsanger.gz
	ERR6002592_1.fastq.gz	Fastqsanger.gz

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ilBlaAdus2 alternate haplotype

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Genome wide gene-expression analysis of the spider mite Tetranychus urticae after transfer from their common host (bean) to either cotton, maize or soy

Project description:A genetically diverse strain (labelled as London) of the phytophagous mite Tetranychus urticae was transferred from its common host (bean) to other host plants (cotton, maize or soy). Three different host plant species were included in the experimental set-up: cotton (Gossypium spp.), maize (Zea mays cv. Ronaldinio) and soy (Glycine max cv. Merlin). Five generations after host-transfer, total RNA of all mite populations (London, London-SOY, London-MAIZE and London-COTTON) was collected and used in a genome-wide gene expression microarray (Sureprint G3 microarray, Agilent) Microarray analysis revealed large-scale differential expression of genes coding for enzymes of detoxification families, secreted proteins with unknown functions and regulatory enzymes.

2016-10-10 | GSE80337 | GEO

Genome wide gene-expression analysis of the spider mite Tetranychus urticae after long term host transfer from acyanogenic Phaseolus vulgaris cv. 'Prelude' bean plants to cyanogenic Phaseolus lunatus cv. '8078' bean plants

Project description:250 adult T. urticae females from the London strain (grown on acyanogenic P. vulgaris cv. Prelude bean plants) were transferred to cyanogenic P. lunatus cv. 8078 bean plants. Thirty-five generations after the host transfer, total RNA was extracted from mites growing on both bean species (London and London-CYANO strain) and used in in a genome-wide gene expression microarray (Sureprint G3 microarray, Agilent) experiment to assess significantly differentially expressed genes (FC ≥ 2 and FDR-corrected p-value < 0.05) between mites grown on P. vulgaris (cv. Prelude) bean plants (London strain) and mites grown for 35 generations on P. lunatus (cv. 8078) bean plants (London-CYANO strain).

2014-04-30 | GSE50162 | GEO

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