Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

MRSA CC398 in monkey faeces

ABSTRACT: Detection of MRSA CC398 in monkey faeces and its living environment.

PROVIDER: PRJEB42195 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5014910_1.fastq.gz	Fastqsanger.gz
	ERR5014910_2.fastq.gz	Fastqsanger.gz
	ERR5014909_1.fastq.gz	Fastqsanger.gz
	ERR5014909_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The distribution of mobile genetic elements (MGEs) in MRSA CC398 is associated with both host and country.

Project description:Methicillin-resistant Staphylococcus aureus clonal complex (CC) 398 has emerged from pigs to cause human infections in Europe and North America. We used a new 62-strain S. aureus microarray (SAM-62) to compare genomes of isolates from three geographical areas (Belgium, Denmark, and Netherlands) to understand how CC398 colonizes different mammalian hosts. The core genomes of 44 pig isolates and 32 isolates from humans did not vary. However, mobile genetic element (MGE) distribution was variable including SCCmec. Phi3 bacteriophage and human specificity genes (chp, sak, scn) were found in invasive human but not pig isolates. SaPI5 and putative ruminant specificity gene variants (vwb and scn) were common but not pig specific. Virulence and resistance gene carriage was host associated but country specific. We conclude MGE exchange is frequent in CC398 and greatest among populations in close contact. This feature may help determine epidemiological associations among isolates of the same lineage. [Data is also available from http://bugs.sgul.ac.uk/E-BUGS-120]

2012-01-21 | E-BUGS-120 | biostudies-arrayexpress

WGS of LA-MRSA CC398

Project description:Genotypic characterization of LA-MRSA CC398 in pigsty visitors – Transient carriage or persistence?

| PRJEB33854 | ENA

LA-MRSA CC398 from UK animals

Project description:Livestock-associated methicillin resistant Staphylococcus aureus (LA-MRSA) CC398 isolated from UK animals belong to European lineages

| PRJEB14251 | ENA

Emergence of CC398 MRSA in New Zealand

Project description:This study describes the emergence and evolution of CC398 MRSA in New Zealand

| PRJEB12552 | ENA

Whole Genome Sequencing of CC398 LA-MRSA in UK

Project description:Whole Genome Sequencing of CC398 LA-MRSA in UK

| PRJEB25744 | ENA

faeces

Project description:faeces Metagenome

| PRJNA898068 | ENA

faeces

Project description:faeces Metagenome