Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complex phyllosphere microbiome aids in the establishment of the invasive macrophyte Hydrilla verticillata

ABSTRACT: The highly taxonomically and functionally complex phyllosphere microbiome aids in the establishment of the invasive macrophyte Hydrilla verticillata (L.) under conditions of nitrogen scarcity

PROVIDER: PRJEB42360 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Hydrilla verticillata

Project description:Hydrilla verticillata Exome

| PRJNA201006 | ENA

Hydrilla verticillata

Project description:Hydrilla verticillata overview

| PRJNA202079 | ENA

Hydrilla verticillata

Project description:Hydrilla verticillata Raw sequence reads

| PRJNA977960 | ENA

Hydrilla verticillata

Project description:Hydrilla verticillata Raw sequence reads

| PRJNA507517 | ENA

Project description:decaying Hydrilla verticillata

| PRJNA581016 | ENA

The phylogeographic structure of Hydrilla verticillata (Hydrocharitaceae) in China and its implications for the biogeographic history of this worldwide-distributed submerged macrophyte.

Project description:BackgroundAquatic vascular plants are a distinctive group, differing from terrestrial plants in their growth forms and habitats. Among the various aquatic plant life forms, the evolutionary processes of freshwater submerged species are most likely distinct due to their exclusive occurrence in the discrete and patchy aquatic habitats. Using the chloroplast trnL-F region sequence data, we investigated the phylogeographic structure of a submerged macrophyte, Hydrilla verticillata, the single species in the genus Hydrilla, throughout China, in addition to combined sample data from other countries to reveal the colonisation and diversification processes of this species throughout the world.ResultsWe sequenced 681 individuals from 123 sampling locations throughout China and identified a significant phylogeographic structure (NST > GST, p < 0.01), in which four distinct lineages occurred in different areas. A high level of genetic differentiation among populations (global FST = 0.820) was detected. The divergence of Hydrilla was estimated to have occurred in the late Miocene, and the diversification of various clades was dated to the Pleistocene epoch. Biogeographic analyses suggested an East Asian origin of Hydrilla and its subsequent dispersal throughout the world.ConclusionsThe presence of all four clades in China indicates that China is most likely the centre of Hydrilla genetic diversity. The worldwide distribution of Hydrilla is due to recent vicariance and dispersal events that occurred in different clades during the Pleistocene. Our findings also provide useful information for the management of invasive Hydrilla in North America.

| S-EPMC4460629 | biostudies-literature

Morphological and transcriptomic responses/acclimations of erect-type submerged macrophyte <i>Hydrilla verticillata</i> both at low-light exposure and light recovery phases.

Project description:Light intensity is a determinant for submerged macrophytes. Little is known about their molecular responses to low-light exposure, despite more informative and responsive than morphological traits. For erect-type submerged macrophytes, the stem is more crucial relative to the leaf in acclimation to low-light stress, but receives less attention. We determined morphological and stem transcriptomic responses/acclimations of Hydrilla verticillata to extremely and mildly low light (7.2 and 36 μmol photons m-2 s-1, respectively), that is, EL and ML, with the radiation intensity of 180 μmol photons m-2 s-1 as the control. Low-light exposure continued for 9 days, followed by a 7-day recovery phase (180 μmol photons m-2 s-1). At the exposure phase, the low-light treatments, in particular the EL, decreased the relative growth ratio, but induced greater height and longer stem internode distance and epidermal cell. Such responses/acclimations continued into the recovery phase, despite more or less changes in the magnitude. Transcriptome showed that the photosynthetic system was inhibited at the exposure phase, but the macrophyte adjusted hormone synthesis relating to cell division and elongation. Moreover, the EL activated cell stress responses such as DNA repair. Following light recovery, the macrophyte exhibited a strong-light response, although energy metabolism enhanced. Especially, the EL enriched the pathways relating to anthocyanin synthesis at such phase, indicating an activation of photoprotective mechanism. Our findings suggest that negative influences of low light occur at both low-light exposure and recovery phases, but submerged macrophytes would acclimate to light environments. Transcriptome can show molecular basis of plant responses/acclimations, including but not limited to morphology. This study establishes a bridge connecting morphological and molecular responses/acclimations.

| S-EPMC10556543 | biostudies-literature

Sciadopitys verticillata

Project description:Sciadopitys verticillata Organism overview

| PRJNA84015 | ENA

Sciadopitys verticillata

Project description:Sciadopitys verticillata Raw sequence reads

| PRJNA306397 | ENA

Mentha x verticillata

Project description:Mentha x verticillata overview

| PRJNA846479 | ENA