Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk RNA-seq of fibroblasts and mesothelial cells from healthy mouse tissues

ABSTRACT: Bulk RNA-seq of fibroblasts and mesothelial cells from healthy mouse tissues

PROVIDER: PRJEB44076 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR5643040_1.fastq.gz	Fastqsanger.gz
	ERR5643040_2.fastq.gz	Fastqsanger.gz
	ERR5643050_1.fastq.gz	Fastqsanger.gz
	ERR5643050_2.fastq.gz	Fastqsanger.gz
	ERR5643060_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 94

Similar Datasets

Bulk RNA-seq of fibroblasts and mesothelial cells from healthy mouse tissues

Project description:Bulk RNA-seq was performed on fibroblasts and mesothelial cells from 11 different healthy mouse tissues such as bone, epididymal, brown and inguinal fat pads, mesentery, omentum, pancreas, liver, lung, lymph node and spleen. This data was used to examine tissue specific gene expression programs of fibroblasts and mesothelial cells.

2021-05-04 | E-MTAB-10324 | biostudies-arrayexpress

Bulk ATAC-seq data of fibroblasts from healthy mouse tissues

Project description:Bulk ATAC-seq was performed on fibroblasts from 8 different healthy mouse tissues such as bone, epididymal and inguinal fat pads, omentum, liver, lung and lymph node. This data was used to examine tissue specific chromatin landscapes in fibroblasts.

2021-05-04 | E-MTAB-10316 | biostudies-arrayexpress

Bulk ATAC-seq data of fibroblasts from healthy mouse tissues

Project description:Bulk ATAC-seq data of fibroblasts from healthy mouse tissues

| PRJEB44072 | ENA

Single cell RNA-seq of healthy mouse skin fibroblasts

Project description:Single cell RNA-seq was performed on healthy mouse skin fibroblasts. This data along with single cell transcriptomics datasets of fibroblasts from other healthy tissues was used to construct a steady state mouse fibroblast atlas.

2021-05-04 | E-MTAB-10315 | biostudies-arrayexpress

Identification of novel markers of the mesothelial lineage and mesothelioma

Project description:Microarray expression arrays on mesothelium and other tissues dissected from mice were used to identify candidate mesothelial lineage markers. These were then tested by qRTPCR across a panel of human mesothelioma cells lines, other cancers, and normal primary cells includidng mesothelial cells. Twenty four samples were analysed, composed of 8 tissues in triplicate

2011-12-18 | E-GEOD-30793 | biostudies-arrayexpress

Gene expression profile of mesothelial-derived carcinoma-associated fibroblasts

Project description:RNA-sequencing was carried out on ascetic fluid-isolated mesothelial cells from low-grade serous ovarian cancer patients, high-grade serous ovarian cancer patients, chemotherapy-treated high-grade serous ovarian cancer patients and control mesothelial cells obtained from non-oncologic patients to identify differentially expressed genes associated to mesothelial-to-mesenchymal transition process.

| EGAS00001003747 | EGA

Identification of novel markers of the mesothelial lineage and mesothelioma

2011-12-18 | GSE30793 | GEO

Time-course analysis of transcriptomic changes of mesothelial cells after stress exposure

Project description:To determine the transcriptional program that imparts adhesion capacity to healthy mesothelial cells, we analyzed subtle gene expression changes by performing highly parallel single-cell RNA-seq genome-wide expression profiling of individual mesothelial cells exposed to stress (Extended Figure 6A) using the Drop-seq workflow (Pubmed ID 26000488). We individually sequenced >16,000 cells from Met-5A mesothelial cells at various time-points after exposure to a 15 min desiccation shock, as well as under control unstressed conditions.

2020-04-30 | GSE149583 | GEO

Bulk RNA-sequencing of synovial fibroblasts (IC stimulation)

Project description:Bulk RNA-sequencing of synovial fibroblasts stimulated with IC

2024-09-30 | GSE272541 | GEO

Identification of mesothelial-to-mesenchymal gene signature in ascitic fluid-isolated mesothelial cells through RNA-sequencing

Project description:RNA-sequencing analysis was carried out on ascetic fluid-isolated mesothelial cells from ovarian cancer patients compared to control human peritoneal mesothelial cells to identify a mesothelial-mesenchymal gene signature.

2017-03-01 | GSE84829 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data