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Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso

ABSTRACT: Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso

PROVIDER: PRJEB44192 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	ERR5690520_1.fastq.gz	Fastqsanger.gz
	ERR5690520_2.fastq.gz	Fastqsanger.gz
	ERR5690521_1.fastq.gz	Fastqsanger.gz
	ERR5690521_2.fastq.gz	Fastqsanger.gz
	ERR5690522_1.fastq.gz	Fastqsanger.gz

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Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso.

Project description:BackgroundGastrointestinal infections are a global public health problem. In Burkina Faso, West Africa, exposure to Salmonella through the consumption of unhygienic street food represents a major risk of infection requiring detailed evaluation.MethodsBetween June 2017 and July 2018, we sampled 201 street food stalls, in 11 geographic sectors of Ouagadougou, Burkina Faso. We checked for Salmonella contamination in 201 sandwiches (one per seller), according to the ISO 6579:2002 standard. All Salmonella isolates were characterized by serotyping and antimicrobial susceptibility testing, and whole-genome sequencing was performed on a subset of isolates, to investigate their phylogenetic relationships and antimicrobial resistance determinants.ResultsThe prevalence of Salmonella enterica was 17.9% (36/201) and the Salmonella isolates belonged to 16 different serotypes, the most frequent being Kentucky, Derby and Tennessee, with five isolates each. Six Salmonella isolates from serotypes Brancaster and Kentucky were multidrug-resistant (MDR). Whole-genome sequencing revealed that four of these MDR isolates belonged to the emergent S. enterica serotype Kentucky clone ST198-X1 and to an invasive lineage of S. enterica serotype Enteritidis (West African clade).ConclusionThis study reveals a high prevalence of Salmonella spp. in sandwiches sold in Ouagadougou. The presence of MDR Salmonella in food on sale detected in this study is also matter of concern.

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Project description:Contamination of street food with multidrug-resistant Salmonella, in Ouagadougou, Burkina Faso

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