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D labrax reference transcriptome

ABSTRACT: D labrax reference transcriptome

PROVIDER: PRJEB4602 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	ERR341289_1.fastq.gz	Fastqsanger.gz
	ERR341289_2.fastq.gz	Fastqsanger.gz
	ERR341290_1.fastq.gz	Fastqsanger.gz
	ERR341290_2.fastq.gz	Fastqsanger.gz
	ERR341291_1.fastq.gz	Fastqsanger.gz

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D labrax reference transcriptome

Project description:We aimed at obtaining a reference transcriptome for the European seabass. We characterized by Illumina paired-ends RNA-seq the D. labrax transcriptome for two targeted organs, using a diversity of conditions, animal stages and genotypes to warranty the widest variety of reconstructed transcripts. The brain (including pineal gland and pituitary) and liver were chosen as they are complementary and at a crossroads of many key neuroendocrine, metabolic and behavioral regulations. Dicentrarchus labrax_2 targeted organs (liver and brain) with two technical replicates each (using two different fragment sizes) half a GAIIX run total. We used two flow cells per organ and each was corresponding to a different fragment size. The expected sizes were 350 and 500bp.

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