Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Monitoring SARS-CoV-2 dynamics in wastewater

ABSTRACT: Wastewater metagenomics sequencing for the monitoring of SARS-CoV-2 dynamics in Rotterdam, the Netherlands

PROVIDER: PRJEB48206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR7565680_1.fastq.gz	Fastqsanger.gz
	ERR7565680_2.fastq.gz	Fastqsanger.gz
	ERR7565690_1.fastq.gz	Fastqsanger.gz
	ERR7565690_2.fastq.gz	Fastqsanger.gz
	ERR7565700_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1390

Similar Datasets

FIRST DETECTION OF SARS-COV-2 PROTEINS IN WASTEWATER SAMPLES BY MASS SPECTROMETRY

Project description:On March 12, 2020, the World Health Organization (WHO) declared COVID-19 as a global pandemic. COVID-19 is produced by a novel β-coronavirus known as Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) [1]. Several studies have detected SARS-CoV-2 RNA in urine, feces, and other biofluids from both symptomatic and asymptomatic people with COVID-19 [2], suggesting that SARS-CoV-2 RNA could be detected in human wastewater [3]. Thus, wastewater-based epidemiology (WBE) is now used as an approach to monitor COVID-19 prevalence in many different places around the world [4-10] . Reverse transcription quantitative polymerase chain reaction (RT-qPCR) is the most common SARS-CoV-2 detection method in WBE, but there are other methods for viral biomolecule detection that could work as well. The aim of this study was to evaluate the presence of SARS-CoV-2 proteins in untreated wastewater (WW) influents collected from six wastewater treatment plants (WWTPs), from Durham Region, Ontario, Canada, using a LC-MS/MS-based proteomics approach. We identified many SARS-CoV-2 proteins in these wastewater samples, with peptides from pp1ab being the most consistently detected and with consistent abundance.

2022-03-31 | PXD026412 | Pride

Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR

Project description:Optimised protocol for monitoring SARS-CoV-2 in wastewater using RC-PCR

| PRJEB57192 | ENA

SARS-CoV-2 Wastewater

Project description:SARS-CoV-2 Wastewater Genome sequencing and assembly

| PRJNA769388 | ENA

SARS-CoV-2 via wastewater

Project description:SARS-CoV-2 via wastewater Raw sequence reads

| PRJNA817360 | ENA

Wastewater sequencing for SARS-CoV-2

Project description:Wastewater sequencing for SARS-CoV-2

| PRJNA741211 | ENA

Diagnostic Microbiology & Infectious Disease Rapid and sensitive detection of Sars-CoV-2 variants in nasopharyngeal swabs and wastewaters

Project description:The SARS-CoV-2 virus is continuously evolving, with appearance of new variants characterized by multiple genomic mutations, some of which can affect functional properties, including infectivity, interactions with host immunity, and disease severity. The rapid spread of new SARS-CoV-2 variants has highlighted the urgency to trace the virus evolution, to help limit its diffusion, and to assess effectiveness of containment strategies. We propose here a PCR-based rapid, sensitive and low-cost allelic discrimination assay panel for the identification of SARS-CoV-2 genotypes, useful for detection in different sample types, such as nasopharyngeal swabs and wastewater. The tests carried out demonstrate that this in-house assay, whose results were confirmed by SARS-CoV-2 whole-genome sequencing, can detect variations in up to 10 viral genome positions at once and is specific and highly sensitive for identification of all tested SARS-CoV-2 clades, even in the case of samples very diluted and of poor quality, particularly difficult to analyze.

2022-06-03 | E-MTAB-11261 | biostudies-arrayexpress

SARS-CoV-2 monitoring in mink farms in Poland

Project description:SARS-CoV-2 monitoring in mink farms in Poland

| PRJEB56174 | ENA

Danish SARS-CoV-2 wastewater surveillance

Project description:Data from the Danish SARS-CoV-2 wastewater surveillance

| PRJEB65603 | ENA

Northwest UK SARS-CoV-2 wastewater sequencing

Project description:Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK

| PRJEB42191 | ENA

wastewater metagenome

Project description:Monitoring SARS-CoV-2 in Houston wastewater