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IdSarCaer1

ABSTRACT: Sarcophaga caerulescens genome assembly, idSarCaer1

PROVIDER: PRJEB50004 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
		Other
	CAKMJM01.dat.gz	Other
	CAKMJM01.fasta.gz	Fasta.gz
	CAKMJM01.master.dat	Other

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Transcriptomic comparison between nickel hyperaccumulator and non-accumulator plant species from the Noccaea genus (Brassicaceae) from France

Project description:The leaf transcriptome of the nickel hyperaccumulator specie Noccaea caerulescens subsp. fimiensis living on serpentine soils were compared to the closely related non-nickel-accumulators Noccaea caerulescens "Viviez" growing on a zinc mining site and Noccaea montana living on serpentine soil, to identity differentially expressed genes potentially involved in Ni hyperaccumulation.

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Transcription profiling of Arabidopsis or Thlaspi caerulescens roots exposed to deficient, sufficient or excess zinc

Project description:A common reference model was used to design the microarray experiment, in which cDNA from T. caerulescens roots exposed to 100 uM (sufficient) zinc was used as the common reference. Every slide was always hybridized with the common reference sample and with a sample from one of the treatments (Arabidopsis or T. caerulescens exposed to deficient, sufficient or excess zinc). The common reference was labeled with the fluorescent dye Cyanine 3 (Cy3) and the treatment samples were labeled with Cyanine 5 (Cy5). As a quality control step we performed a dye-swap hybridization for one sample (from T. caerulescens roots exposed to sufficient zinc).

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idSarSubv1

Project description:Sarcophaga subvicina genome assembly, idSarSubv1

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