Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Impact of Dietary Fiber on West Nile Virus Infection

ABSTRACT: Impact of Dietary Fiber on West Nile Virus Infection

PROVIDER: PRJEB50194 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR8093150_1.fastq.gz	Fastqsanger.gz
	ERR8093150_2.fastq.gz	Fastqsanger.gz
	ERR8093160_1.fastq.gz	Fastqsanger.gz
	ERR8093160_2.fastq.gz	Fastqsanger.gz
	ERR8093170_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 52

Similar Datasets

Global gene expression in response to West Nile virus in mouse spleen and liver

2012-12-19 | GSE39259 | GEO

West Nile virus

Project description:West Nile virus overview

| PRJNA69671 | ENA

scRNA-seq of peripheral blood from West Nile Virus-infected patients

Project description:We profile the peripheral blood of patients infected with West Nile Virus with divergent disease-trajectories (West Nile Encephalitis, West Nile Fever, and asymptomatic) during relatively acute infection and at a convalescent timepoint (~90-days later) using single-cell RNA sequencing in an effort to uncover determinants of disease progression and flesh out the landscape of infection. In the blood of the infected patients, stratified cell-states involved in acute viral infection resolve into more homogenous states at the follow-up blood draws, A dramatic shared transcriptional shift between the primary blood-draws during acute infection and the 90-day follow-ups in all observed compartments allows us to highlight multiple cell-type and cell-state-specific patterns of gene expression.

2021-12-24 | GSE142595 | GEO

Global gene expression in response to West Nile virus in mouse spleen and liver

Project description:Purpose of this experiment was to further understand how innate immune defenses impact host response and West Nile virus tissue tropism. This study examined host-transcriptional response to West Nile virus in permissive and nonpermissive tissues using wildtype mice and mice with genetically altered interferon signaling pathways. Age-matched six to twelve week old mice were inoculated subcutaneously in the left rear footpad with 100 PFU of West Nile virus isolate TX 2002-HC (WNV-TX) in a 10 microL inoculum diluted in Hanks balanced salt solution (HBSS) supplemented with 1% heat-inactivated FBS. Mice were monitored daily for morbidity and mortality. Expression oligonucleotide arrays were performed on RNA isolated from spleen and liver tissues from strain and time-matched mock infected mice (n=2) and WNV-TX infected wild type (WT; n=3; day 4 post-infection), Ips-1-/-(n=3; day 4 post-infection), Ifnar-/- (n=3; day 2 post-infection), and Ips-1-/-xIfnar-/- (DKO; n=3; day 4 post-infection) mice.

2012-12-19 | E-GEOD-39259 | biostudies-arrayexpress

Transcriptome analysis of Culex cells after West Nile virus infection

Project description:High throughput sequencing was performed using Illumina HiSeq to identify differentially regulated genes in Culex mosquitoes after West Nile virus infection.

2015-10-01 | GSE60229 | GEO

West Nile virus

Project description:West Nile virus: Genome sequencing

| PRJEB80643 | ENA

West Nile virus

Project description:West Nile virus Raw sequence reads

| PRJNA1096139 | ENA

West Nile virus

Project description:West Nile virus Raw sequence reads

| PRJNA1168961 | ENA

West Nile virus

Project description:West Nile virus genomic data from California