Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: EMG produced TPA metagenomics assembly of PRJEB33338 data set (Metagenomics of chicken cecal contents from fast and slower growing birds).

PROVIDER: PRJEB50262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR3414572.fasta.gz	Fasta.gz
	ERR3414591.fasta.gz	Fasta.gz
	ERR3414583.fasta.gz	Fasta.gz
	ERR3414588.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 25

Similar Datasets

Metagenomics of chicken cecal contents

Project description:Metagenomics of chicken cecal contents from fast and slower growing birds

| PRJEB33338 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA193217 data set (Chicken cecal contents Metagenome).

| PRJEB41355 | ENA

Comparative analysis of Gallus gallus cecal epithelia following Eimeria tenella infection

2012-12-10 | GSE39602 | GEO

Comparative analysis of Gallus gallus cecal epithelia following Eimeria tenella infection

Project description:Relative expression levels of mRNAs in chicken cecal epithelia experimentally infected with Eimeria tenella were measured at 4.5 days post-infection. Two weeks old chickens were uninfected (negative control) or were orally inoculated with sporulated oocysts of Eimeria tenella. Cecal epithelia samples were collected from >12 birds in infected or uninfected group at 4.5 d following infections, in which samples from 4 birds were pooled together to form a total 3 biological replicates in each group. Parasite merozoites were also collected from four infected chickens at 5 d after infections. Uninfected control samples, merozoites and infection group samples were selected for RNA extraction and hybridization on Affymetrix microarrays. We used Affymetrix GeneChip chicken genome arrays to detail the chicken cecal epithelia gene expression in the control and E. tenella-infected birds. Infected, uninfected chicken cecal epithelia and merozoites were selected for RNA extraction and hybridization with Affymetrix microarrays. Our goal was to analyze global transcriptome changes in chicken cecal mucous membranes in response to E. tenella infection in vivo. We used infected (T1,T2,T3; three biological replicates) and uninfected (Neg1, Neg2, Neg3; three biological replicates) samples to identify genes that were differentially expressed. Meanwhile, RNA and probes were also prepared from parasite merozoites (Mzt) from infected samples (Mzt) and used as an additional control in microarray hybridization.

2012-12-10 | E-GEOD-39602 | biostudies-arrayexpress

chicken gut metagenome

Project description:Chicken cecal contents Metagenome

| PRJNA193217 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA435487 data set (Chicken ceacal metagenome).

| PRJEB52537 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJEB52139 data set (HoloFood Chicken Caecum Metatranscriptome).

| PRJEB66287 | ENA

Project description:EMG produced TPA metagenomics assembly of the Metagenomics of chicken manure composts (compost sample) data set.

| PRJEB30139 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA543206 data set (Chicken metagenome Raw sequence reads).

| PRJEB52470 | ENA

Project description:EMG produced TPA metagenomics assembly of PRJNA479723 data set (Nanopore metagenomics).

| PRJEB42552 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data