Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RpoE transcription analysis

ABSTRACT: transcript analysis of RpoE in Pseudomonas plecoglossicida affected temperature

PROVIDER: PRJEB50342 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR8482363_1.fastq.gz	Fastqsanger.gz
	ERR8482363_2.fastq.gz	Fastqsanger.gz
	ERR8482364_1.fastq.gz	Fastqsanger.gz
	ERR8482364_2.fastq.gz	Fastqsanger.gz
	ERR8482365_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Analysis of the temperature-dependent virulence of Pseudomonas plecoglossicida with iTRAQ

Project description:Pseudomonas plecoglossicida is a facultative pathogen that is associated with diseases of multiple fish, mainly at 15-20 °C. Although fish disease caused by P. plecoglossicida has led to significant economic losses, the mechanisms of the temperature-dependent virulence are unclear. Here, we try to identify potential pathogenicity mechanisms and demonstrate the direct regulation of virulence factors by temperature with iTRAQ.

2018-11-22 | PXD009586 | Pride

RNA-seq analysis of Pseudomonas plecoglossicida (NZBD9)

Project description:RNA-seq analysis of Pseudomonas plecoglossicida (NZBD9)

| PRJNA386730 | ENA

RpoE regulon in Rhodobacter sphaeroides

Project description:In Rhodobacter sphaeroides a transcriptional response to the reactive oxygen species singlet oxygen is controlled by the group IV sigma factor RpoE and the anti-sigma factor ChrR. In this study, we integrated various large datasets to identify genes within the singlet oxygen stress response that contain RpoE-dependent promoters within R. sphaeroides. Transcript pattern clustering and a RpoE-binding sequence model were used to predict candidate promoters that respond to singlet oxygen stress in R. sphaeroides. These candidate promoters were experimentally validated to nine R. sphaeroides RpoE-dependent promoters that control the transcription of 15 genes activated by singlet oxygen.

2010-07-01 | GSE22576 | GEO

Project description:The transcriptome of spleen of Epinephelus coioides infected with rpoE-RNAi strain of Pseudomonas plecoglossicida

| PRJNA727955 | ENA

Project description:Pseudomonas plecoglossicida

| PRJNA936074 | ENA

Project description:Pseudomonas plecoglossicida

| PRJNA946192 | ENA

Pseudomonas plecoglossicida and mutant supernatant LC-MS/MS analysis

Project description:A T3SS translocators deletion strain (△popBD) of P. plecoglossicida was constructed to investigate the function of T3SS. Then comparative secretome analysis of the P. plecoglossicida wild-type (WT) and △popBD mutant strains was conducted by label-free quantitation (LFQ) mass spectrometry.

2024-01-26 | PXD042864 | Pride

RpoE regulon in Rhodobacter sphaeroides

2010-06-30 | E-GEOD-22576 | biostudies-arrayexpress

Pseudomonas plecoglossicida

Project description:Pseudomonas plecoglossicida overview

| PRJNA171791 | ENA

ChIP-chip analysis of RNAP and Sigma factor binding to the Salmonella enterica serovar Typhimurium chromosome

Project description:ChIP-chip analysis of RNA Polymerase (RNAP), RpoD, RpoE, RpoH and RpoN in exponential phase (OD 0.2) and early stationary phase (OD 2.0) Salmonella enterica serovar Typhimurium SL1344 cultures

2017-04-01 | GSE97283 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data