Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome sequences of bacterial isolates from marine sponges from Taiwan

ABSTRACT: Genome sequences of bacterial isolates from marine sponges sampled off the coast of Taiwan

PROVIDER: PRJEB50698 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Bacterial sequences

Project description:Bacterial sequences

| PRJEB35644 | ENA

Marine sponges

Project description:Marine sponges Raw sequence reads

| PRJNA826283 | ENA

Antarctic sponges

Project description:Antarctic sponges Raw sequence reads

| PRJNA1055436 | ENA

Screening and validation of lncRNAs and circRNAs as miRNA sponges [siRNA, miRNA-2_0]

Project description:Intensive research in past two decades has uncovered the presence and importance of noncoding RNAs (ncRNAs), which includes microRNAs (miRs) and long ncRNAs (lncRNAs). These two classes of ncRNAs interact to a certain extent, as some lncRNAs bind to miRs to sequester them. Such lncRNAs are collectively called 'competing endogenous RNAs' or 'miRNA sponges'. In this study, we screened for lncRNAs that may act as miRNA sponges using the publicly available data sets and databases. To uncover the roles of miRNA sponges, loss-of-function experiments were conducted, which revealed the biological roles as miRNA sponges. LINC00324 is important for the cell survival by binding to miR-615-5p leading to the de-repression of its target BTG2 LOC400043 controls several biological functions via sequestering miR-28-3p and miR-96-5p, thereby changing the expressions of transcriptional regulators. Finally, we also screened for circular RNAs (circRNAs) that may function as miRNA sponges. The results were negative at least for the selected circRNAs in this study. In conclusion, miRNA sponges can be identified by applying a series of bioinformatics techniques and validated with biological experiments.

2016-07-06 | GSE73689 | GEO

The Non-Bacterial Microbiota of Domestic Kitchen Sponges

Project description:Non-Bacterial Microbiota of Kitchen Sponges

| PRJEB49259 | ENA

Genotyping of PKD2 Arg803* in Taiwan ADPKD Cohort

Project description:PKD2 Arg803* is the most common mutation in Taiwan ADPKD Cohort. Genotyping of 96 PKD2 Arg803* individuals was performed in Axiom Genome-Wide TWB 2.0 Array Plate to study the existence of founder mutation in Taiwan

2022-06-07 | E-MTAB-11846 | biostudies-arrayexpress

Gene expression profile of hepatocellular carcinomain in Taiwan (subset 2)

Project description:In this study, we used RNA-seqeuncing to develop gene expression profile of HCC patients in Taiwan.

2022-03-01 | GSE141200 | GEO

Gene expression profile of hepatocellular carcinomain in Taiwan (subset 1)

Project description:In this study, we used RNA-seqeuncing to develop gene expression profile of HCC patients in Taiwan.

2022-03-01 | GSE141198 | GEO

Screening and validation of lncRNAs and circRNAs as miRNA sponges [siRNA, miRNA-2_0]

2016-07-06 | E-GEOD-73689 | biostudies-arrayexpress

Screening and validation of lncRNAs and circRNAs as miRNA sponges [siRNA, HuGene-1_0-st]

2016-07-06 | GSE73683 | GEO