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IcMelMelo

ABSTRACT: Melolontha melolontha (cockchafer), genomic and transcriptomic data

PROVIDER: PRJEB50970 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	ERR10378008_1.fastq.gz	Fastqsanger.gz
	ERR10378008_2.fastq.gz	Fastqsanger.gz
	ERR8702810_1.fastq.gz	Fastqsanger.gz
	ERR8702810_2.fastq.gz	Fastqsanger.gz
	ERR8705880.fastq.gz	Fastqsanger.gz

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1 - 5 of 13

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icMelMelo

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icMelMelo1 alternate haplotype

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Spatial and temporal patterns in the population genomic structure of the European cockchafer Melolontha melolontha in the Alpine region

Project description:Spatial and temporal patterns in the population genomic structure of the European cockchafer Melolontha melolontha in the Alpine region

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tfGorAlbo

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The Melolontha melolontha pathogens Beauveria brongniartii and Beauveria pseudobassiana exhibit clonal genomic population structure in a European Alpine region

Project description:The Melolontha melolontha pathogens Beauveria brongniartii and Beauveria pseudobassiana exhibit clonal genomic population structure in a European Alpine region

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Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

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