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Investigation of changes associated with the formation of holocentric chromosomes in Cuscuta spp.

ABSTRACT: Investigation of changes associated with the formation of holocentric chromosomes in Cuscuta spp.

PROVIDER: PRJEB51495 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
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	ERR10073826_1.fastq.gz	Fastqsanger.gz
	ERR10073826_2.fastq.gz	Fastqsanger.gz
	ERR10073827_1.fastq.gz	Fastqsanger.gz

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Cuscuta spp.

Project description:Small RNA-seq from multiple Cuscuta species parasitizing Arabidopsis

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Characterization of transcriptomes in Cuscuta spp.

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Holocentric chromosomes.

Project description:Holocentric chromosomes possess multiple kinetochores along their length rather than the single centromere typical of other chromosomes [1]. They have been described for the first time in cytogenetic experiments dating from 1935 and, since this first observation, the term holocentric chromosome has referred to chromosomes that: i. lack the primary constriction corresponding to centromere observed in monocentric chromosomes [2]; ii. possess multiple kinetochores dispersed along the chromosomal axis so that microtubules bind to chromosomes along their entire length and move broadside to the pole from the metaphase plate [3]. These chromosomes are also termed holokinetic, because, during cell division, chromatids move apart in parallel and do not form the classical V-shaped figures typical of monocentric chromosomes [4-6]. Holocentric chromosomes evolved several times during both animal and plant evolution and are currently reported in about eight hundred diverse species, including plants, insects, arachnids and nematodes [7,8]. As a consequence of their diffuse kinetochores, holocentric chromosomes may stabilize chromosomal fragments favouring karyotype rearrangements [9,10]. However, holocentric chromosome may also present limitations to crossing over causing a restriction of the number of chiasma in bivalents [11] and may cause a restructuring of meiotic divisions resulting in an inverted meiosis [12].

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Pathogenic response of Glycine max to the stem parasitic plant Cuscuta

Project description:Little is known about plant pathogenic response to parasitic plants, although some parasitic plants affect crop production in certain areas. To study this, we chose Glycine max as the model host plant and investigated changes in expression patterns after parasitization by Cuscuta using microarrays. Transcriptional change of Glycine max stem with and without Cuscuta at 2 different stages were compared

2014-06-27 | E-GEOD-51328 | biostudies-arrayexpress

Cuscuta

Project description:Haustorial genetics of Cuscuta

| PRJNA542619 | ENA

Mitotic Spindle Attachment to the Holocentric Chromosomes of Cuscuta europaea Does Not Correlate With the Distribution of CENH3 Chromatin.

Project description:The centromere is the region on a chromosome where the kinetochore assembles and spindle microtubules attach during mitosis and meiosis. In the vast majority of eukaryotes, the centromere position is determined epigenetically by the presence of the centromere-specific histone H3 variant CENH3. In species with monocentric chromosomes, CENH3 is confined to a single chromosomal region corresponding to the primary constriction on metaphase chromosomes. By contrast, in holocentrics, CENH3 (and thus centromere activity) is distributed along the entire chromosome length. Here, we report a unique pattern of CENH3 distribution in the holocentric plant Cuscuta europaea. This species expressed two major variants of CENH3, both of which were deposited into one to three discrete regions per chromosome, whereas the rest of the chromatin appeared to be devoid of CENH3. The two CENH3 variants fully co-localized, and their immunodetection signals overlapped with the positions of DAPI-positive heterochromatic bands containing the highly amplified satellite repeat CUS-TR24. This CENH3 distribution pattern contrasted with the distribution of the mitotic spindle microtubules, which attached at uniform density along the entire chromosome length. This distribution of spindle attachment sites proves the holocentric nature of C. europaea chromosomes and also suggests that, in this species, CENH3 either lost its function or acts in parallel to an additional CENH3-free mechanism of kinetochore positioning.

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Investigation of centromeres in Cuscuta species

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Cuscuta epithymum

Project description:Cuscuta epithymum overview

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Cuscuta japonica

Project description:Cuscuta japonica overview

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Cuscuta pentagona

Project description:Cuscuta pentagona overview