Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

De-novo genome sequencing of Ambrosia artemisiifolia

ABSTRACT: Common ragweed genome sequencing

PROVIDER: PRJEB52791 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR9725260_1.fastq.gz	Fastqsanger.gz
	ERR9725260_2.fastq.gz	Fastqsanger.gz
	ERR9725252_1.fastq.gz	Fastqsanger.gz
	ERR9725252_2.fastq.gz	Fastqsanger.gz
	ERR9725253_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Ambrosia artemisiifolia

Project description:Ragweed, common allergen

| PRJNA70935 | ENA

Chloroplast genome sequencing of common ragweed (Ambrosia artemisiifolia L)

Project description:Illumina sequencing of the common ragweed chloroplast genome (Ambrosia artemisiifolia L.)

| PRJEB22657 | ENA

Ambrosia artemisiifolia

Project description:Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

| PRJNA339123 | ENA

Illumina sequencing of the chloroplast genome of common ragweed (Ambrosia artemisiifolia L.).

Project description:Common ragweed (Ambrosia artemisiifolia L.) is the most widespread weed and the most dangerous pollen allergenic plant in large areas of the temperate zone. Since herbicides like PSI and PSII inhibitors have their target genes in the chloroplast genome, understanding the chloroplast genome may indirectly support the exploration of herbicide resistance and development of novel control methods. The aim of the present study was to sequence and reconstruct for the chloroplast genome of A. artemisiifolia and establish a molecular dataset. We used an Illumina MiSeq protocol to sequence the chloroplast genome of isolated intact organelles of ragweed plants grown in our experimental garden. The assembled chloroplast genome was found to be 152,215 bp (GC: 37.6%) in a quadripartite structure, where 80 protein coding genes, 30 tRNA and 4 rRNA genes were annotated in total. We also report the complete sequence of 114 genes encoded in A. artemisiifolia chloroplast genome supported by both MIRA and Velvet de novo assemblers and ordered to Helianthus annuus L. using the Geneious software.

| S-EPMC5655400 | biostudies-literature

Ambrosia artemisiifolia

Project description:Ambrosia artemisiifolia alternate pseudohaplotype genome sequencing

| PRJNA929657 | ENA

Ambrosia artemisiifolia

Project description:Ambrosia artemisiifolia principal pseudohaplotype genome sequencing

| PRJNA929658 | ENA

Ambrosia artemisiifolia

Project description:Ambrosia artemisiifolia chloroplast genome raw sequence reads

| PRJNA383307 | ENA

New sesquiterpenoids from Ambrosia artemisiifolia L.

Project description:A new pseudoguaianolide 1 and two new guaiane-type sesquiterpene glucosides 2 and 3, were isolated from the aerial parts of Ambrosia artemisiifolia L together with two known sesquiterpene dilactones 4 and 5. The new compounds were determined on the basis of spectroscopic and chemical methods to be 3?-acetoxy-4?-hydroxy-1?,7?, 10?,11?H-pseudoguaia-12,8?-olide (1), 1?,7?,9?,10?,13?H-guaia-4(5)-en-12,6?-olide 9-O-?-d-glucoside (2) and 4?-hydroxy-1?,5?,7?,9?H-guaia-10(14),11(13)-dien-12-acid 9-O-?-d-glucoside (3). The isolated compounds were evaluated for cytotoxicity against human promyelocytic leukemia HL-60 cell lines in vitro, but were all inactive.

| S-EPMC6272762 | biostudies-literature

Ambrosia artemisiifolia

Project description:Ambrosia artemisiifolia Transcriptome or Gene expression

| PRJNA335689 | ENA

Ambrosia artemisiifolia

Project description:Ambrosia artemisiifolia Transcriptome

| PRJNA313256 | ENA