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IdMyoTess

ABSTRACT: Myopa tessellatipennis, genomic and transcriptomic data

PROVIDER: PRJEB52796 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	ERR10123700_1.fastq.gz	Fastqsanger.gz
	ERR10123700_2.fastq.gz	Fastqsanger.gz
	ERR9730867_1.fastq.gz	Fastqsanger.gz
	ERR9730867_2.fastq.gz	Fastqsanger.gz
	ERR9793195.fastq.gz	Fastqsanger.gz

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idMyoTess

Project description:Myopa tessellatipennis

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Project description:Myopa tessellatipennis overview

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idMyoTess1

Project description:Myopa tessellatipennis genome assembly, idMyoTess1

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idMyoTest

Project description:Myopa testacea, genomic and transcriptomic data

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idMyoTess1 alternate haplotype

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idMyoTess1.Tisiphia_sp_1

Project description:Candidatus Tisiphia endosymbiont of Myopa tessellatipennis genome assembly, idMyoTess1.Tisiphia_sp_1

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idMyoTest

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Myopa testacea

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tfGorAlbo

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Tropheryma whipplei proteome - Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme

Project description:Analyses of new genomic, transcriptomic or proteomic data commonly result in trashing many unidentified data escaping the ‘canonical’ DNA-RNA-protein scheme. Testing systematic exchanges of nucleotides over long stretches produces inversed RNA pieces (here named “swinger” RNA) differing from their template DNA. These may explain some trashed data. Here analyses of genomic, transcriptomic and proteomic data of the pathogenic Tropheryma whipplei according to canonical genomic, transcriptomic and translational 'rules' resulted in trashing 58.9% of DNA, 37.7% RNA and about 85% of mass spectra (corresponding to peptides). In the trash, we found numerous DNA/RNA fragments compatible with “swinger” polymerization. Genomic sequences covered by «swinger» DNA and RNA are 3X more frequent than expected by chance and explained 12.4 and 20.8% of the rejected DNA and RNA sequences, respectively. As for peptides, several match with “swinger” RNAs, including some chimera, translated from both regular, and «swinger» transcripts, notably for ribosomal RNAs. Congruence of DNA, RNA and peptides resulting from the same swinging process suggest that systematic nucleotide exchanges increase coding potential, and may add to evolutionary diversification of bacterial populations.

2017-12-18 | PXD006238 | Pride

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