Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ChIP-Seq of epigenetics mutants

ABSTRACT: ChIP-Seq of epigenetics mutants of Arabidopsis thaliana

PROVIDER: PRJEB53877 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR9880640_1.fastq.gz	Fastqsanger.gz
	ERR9880640_2.fastq.gz	Fastqsanger.gz
	ERR9880650_1.fastq.gz	Fastqsanger.gz
	ERR9880650_2.fastq.gz	Fastqsanger.gz
	ERR9880641_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 40

Similar Datasets

Illumina RNA-Seq of epigenetics mutants

Project description:Illumina RNA-Seq of epigenetics mutants of Arabidopsis thaliana

| PRJEB53848 | ENA

Bisulfite sequencing of epigenetics mutants of Arabidopsis thaliana

Project description:Bisulfite sequencing of epigenetics mutants of Arabidopsis thaliana

| PRJEB58752 | ENA

Oxford Nanopore Technology Whole-genome sequencing of epigenetics mutants of Arabidopsis

Project description:ONT whole-genome sequencing of epigenetics mutants of Arabidopsis

| PRJEB53882 | ENA

ATAC-seq/ChIP part

Project description:Epigenetics: ATAC-seq and ChIP-seq data

| EGAS00001006520 | EGA

Identification of ChIP-seq and RIME grade antibodies for Estrogen Receptor alpha

Project description:Estrogen Receptor alpha (ERα) is a key driver of most breast cancers, and it is the target of endocrine therapies used in the clinic to treat women with ERα positive (ER+) breast cancer. The two methods ChIP-seq (chromatin immunoprecipitation coupled with deep sequencing) and RIME (Rapid Immunoprecipitation of Endogenous Proteins) have greatly improved our understanding of ERα function during breast cancer progression and in response to anti-estrogens. A critical component of both ChIP-seq and RIME protocols is the antibody that is used to pull down the bait protein. To date, most of the ChIP-seq and RIME experiments for the study of ERα have been performed using the sc-543 antibody from Santa Cruz Biotechnology. However, this antibody has been discontinued, thereby severely impacting the study of ERα in normal physiology as well as diseases such as breast cancer and ovarian cancer. Here, we compare the sc-543 antibody with other commercially available antibodies, and we show that 06-935 (EMD Millipore) and ab3575 (Abcam) antibodies can successfully replace the sc-543 antibody for ChIP-seq and RIME experiments.

2019-03-21 | PXD012930 | Pride

cdka mutants-cdka mutants

Project description:rs10-06_cdka - cdka mutants - difference in global transcript in mutants with an affected cell cycle progression - compare wild type plants with mutant plants that show a reduced activity of CDKA1, the key cell cycle regulator in Arabidopsis thaliana

2012-03-20 | GSE36275 | GEO

Oxford Nanopore Technology Direct RNA Sequencing of epigenetics mutants

Project description:Oxford Nanopore Technology Direct RNA Sequencing of epigenetics mutants

| PRJEB53881 | ENA

ChIP-seq for Polycomb repressive complex 2 in wild type and mutants in Arabidopsis

Project description:We performed ChIP-seq for the Polycomb protein FIE using anti-FIE antiserum in germinated wild-type and double class I BPC and C1-2iD transcruption factor family knockdown seedlings of Arabidopsis thaliana.

2017-07-31 | GSE95562 | GEO

Seedling transcriptomes of Arabidopsis thaliana HULK mutants

Project description:We produced RNA-seq reads from messenger RNA isolated from aerial seedling tissue for Arabidopsis thaliana mutants in the HULK gene family. The read data were generated with biological replication (two replicates). The resulting RNA-seq data provide a resource to assess the function of HULK genes in the control of downstream gene expression in A. thaliana. Examination of RNA transcript levels in HULK T-DNA mutants (and mutant combinations therein) in Arabidopsis thaliana.

2015-01-01 | E-GEOD-54125 | biostudies-arrayexpress

Seedling transcriptomes of Arabidopsis thaliana HULK mutants

2015-01-01 | GSE54125 | GEO