Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Multiome scRNA- and scATAC-seq for SHH treated brain organoids

ABSTRACT: Multiome scRNA- and scATAC-seq for SHH treated brain organoids

PROVIDER: PRJEB55517 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Multiome scRNA- and scATAC-seq for SHH treated brain organoids

Project description:To investigate how SHH treatment influences patterning of early brain organoids, we performed multiome sequencing of brain organoids during early development

2022-09-01 | E-MTAB-12003 | biostudies-arrayexpress

OCI-AML22 multiome datasets (scRNA-Seq/scATAC-Seq)

Project description:OCI-AML22 multiome datasets (scRNA-Seq/scATAC-Seq)

| PRJNA1135479 | ENA

scATAC-seq of early brain organoid development from pluripotency

Project description:To study developmental trajectories in brain organoids, we conducted scRNA-seq and scATAC-seq in parallel on a dense timecourse of early development.

2022-08-18 | E-MTAB-11998 | biostudies-arrayexpress

Multiome experiment from GLI3 KO brain organoids

Project description:To study the effect of GLI3 knockout on early brain organoid development, we collected single-cell multiome data from 18 day old brain organoids

2022-08-25 | E-MTAB-12002 | biostudies-arrayexpress

scRNA-seq of early brain organoid development from pluripotency

Project description:To study developmental trajectories in brain organoids, we conducted scRNA-seq and scATAC-seq in parallel on a dense timecourse of early development.

2022-08-18 | E-MTAB-12001 | biostudies-arrayexpress

GRHL2 and AP2a coordinate early surface ectoderm lineage commitment and craniofacial development (Multiome)

Project description:scRNA and scATAC in WT and GRHL2 KO hESCs after 7 days of RA/BMP4 (10x multiome)

2023-02-24 | GSE197912 | GEO

Multiome scRNA- and scATAC-seq of healthy and trisomy 21 (Down's syndrome) foetal liver

Project description:Here, we performed multiome sequencing (snRNA-seq + snATAC-seq) of human fetal liver samples from 3 trisomy 21 (Ts21) and 3 healthy foetuses (median age 14 post-conception weeks). The data set is composed of approximately 60,000 CD45+ foetal liver cells.

2024-07-17 | E-MTAB-13070 | biostudies-arrayexpress

Multiome scRNA- and scATAC-seq of healthy and trisomy 21 (Down's syndrome) foetal liver

Project description:Multiome scRNA- and scATAC-seq of healthy and trisomy 21 (Down's syndrome) foetal liver

| PRJEB63257 | ENA

scRNA-seq data from GLI3 KO in brain organoids

Project description:To study the effect of GLI3 knockout in brain organoids, we collected scRNA-seq data from 45 day old brain organoids with GLI3 KO

2022-08-19 | E-MTAB-11997 | biostudies-arrayexpress

Time course single-cell multiome sequencing data from mESCs treated with Activin A/Lithium Chloride

Project description:This study generated multiome profiling of scRNA-seq and scATAC-seq data from ∼11,000 differentiating mouse embryonic stem cells over a time course. It demonstrates scTIE achieves effective data integration while preserving more biological signals than existing integration methods.

2023-11-25 | GSE223041 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data