Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Distinct chromatin signatures in plant male germline cells - scRNA-seq

ABSTRACT: Distinct chromatin signatures in plant male germline cells - scRNA-seq

PROVIDER: PRJEB55837 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10162435_1.fastq.gz	Fastqsanger.gz
	ERR10162435_2.fastq.gz	Fastqsanger.gz
	ERR10162436_1.fastq.gz	Fastqsanger.gz
	ERR10162436_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Distinct chromatin signatures in plant male germline cells - ATAC-seq

Project description:Distinct chromatin signatures in plant male germline cells - ATAC-seq

| PRJEB47675 | ENA

Distinct chromatin signatures in plant male germline cells - ChIP-seq

Project description:Distinct chromatin signatures in plant male germline cells - ChIP-seq

| PRJEB47677 | ENA

Distinct chromatin signatures in plant male germline cells - RNA-seq

Project description:Distinct chromatin signatures in plant male germline cells - RNA-seq

| PRJEB47676 | ENA

Distinct chromatin signatures in plant male germline cells - scRNA-seq

Project description:Single cell mRNA-seq (3' UMI counting) experiments of the sperm and vegetative nuclei from the Arabidopsis pollen to investigate the heterogeneity of those cell types.

2022-12-02 | E-MTAB-12137 | biostudies-arrayexpress

Distinct chromatin signatures in plant male germline cells - RNA-seq

Project description:RNA-seq (polyA enriched mRNA) experiments in the sperm and vegetative nuclei from the Arabidopsis pollen.

2022-12-02 | E-MTAB-10965 | biostudies-arrayexpress

Distinct chromatin signatures in plant male germline cells - ATAC-seq

Project description:ATAC-seq experiments of the sperm and vegetative nuclei from the Arabidopsis pollen.

2022-12-02 | E-MTAB-10967 | biostudies-arrayexpress

Distinct chromatin signatures in plant male germline cells - ChIP-seq

Project description:ChIP-seq experiments with H3K4me3, H3K27me3 and H3K9me2 in the sperm and vegetative nuclei from the Arabidopsis pollen.

2022-12-02 | E-MTAB-10966 | biostudies-arrayexpress

SCML2 Establishes the Male Germline Epigenome

Project description:Gametogenesis is dependent on the expression of germline-specific genes. However, it remains unknown how the germline epigenome is distinctly established from that of somatic lineages. Here we show that genes commonly expressed in somatic lineages and spermatogenesis-progenitor cells undergo repression in a genome-wide manner in late stages of the male germline and identify underlying mechanisms. SCML2, a germline-specific subunit of a Polycomb repressive complex 1 (PRC1), establishes the unique epigenome of the male germline through two distinct antithetical mechanisms. SCML2 works with PRC1 and promotes RNF2-dependent ubiquitination of H2A, thereby marking somatic/progenitor genes on autosomes for repression. Paradoxically, SCML2 also prevents RNF2-dependent ubiquitination of H2A on sex chromosomes during meiosis, thereby enabling unique epigenetic programming of sex chromosomes for male reproduction. Our results reveal divergent mechanisms involving a shared regulator by which the male germline epigenome is distinguished from that of the soma and progenitor cells.

2015-02-19 | GSE55060 | GEO

Developmentally regulated lncRNAs expression in male germline

2013-06-30 | GSE46896 | GEO

Developmentally regulated lncRNAs expression in male germline

Project description:To decipher the roles of non-coding RNAs during male germline development, we use the lncRNAs microarray to profile the genome-wide lncRNAs expression pattern in the male germline Testes samples from 6 time points were collected for lncRNAs and mRNAs microarray profiling

2013-06-30 | E-GEOD-46896 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data