Dataset Information

Whole-Genome Bisulfite Sequencing analysis of milk samples from Assaf ewes subjected to nutritional challenge and controls

ABSTRACT: Whole-Genome Bisulfite Sequencing analysis of milk samples from Assaf ewes

PROVIDER: PRJEB56589 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	Variant_calling_in_Assaf_ewes_merged.vcf.csi	Other
	Variant_calling_in_Assaf_ewes_merged.vcf.gz	Vcf
	ERR10542449_1.fastq.gz	Fastqsanger.gz
	ERR10542449_2.fastq.gz	Fastqsanger.gz
	ERR10542450_1.fastq.gz	Fastqsanger.gz

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Project description:Feed restriction during the early life of ewe lambs (F0) triggers the transfer of epigenetic marks to the next generation, thus impairing the reproductive performance of F1. However, the effects of this factor on milk production and composition, including its abundance in regulatory miRNA (many of which are contained in exosomes, small vesicles of endocytic origin that play a role in the modulation of immune response of the offspring), has not been tested so far. Therefore, in this study, the replacement ewe lambs (F0) obtained in a previous project (a group of ewes fed milk replacer ad libitum –ADL– vs. a group of ewes restricted –RES– to 62.5% the intake level of milk replacer during the suckling period) were raised under similar post-weaning conditions and mated to obtain the progeny (F1). The F1 dairy ewes were also mated, and six of these F1 dairy ewes were selected and divided into two groups: the F1-ADL group (n=3) born from F0-ADL and the F1-RES group (n=3), born from F0-RES animals. Milk production was controlled during the peak lactation period, and milk samples were obtained for each gland separately to measure chemical composition, somatic cell counts, and bacteriology. Exosomes were also isolated for each gland separately to define the miRNA content. The miRNAome was determined following a Next Generation Sequencing approach. The first preliminary results indicate significant differences in the abundance of five miRNAs in the milk obtained during the peak of lactation. Thus, oar-miR-150, oar-miR-221, oar-miR-23a, oar-miR-27a, oar-miR-376c were all down modulated in F1-RES when compared to F0-ADL. Most of these miRNAs have been found to play a role in biological functions such as development, apoptosis, muscle differentiation, reproduction, or milk production. Moreover, somatic cell count (SCC) was reduced significantly in milk samples during the peak of lactation of F1-RES dairy sheep. No significant differences were found in milk production, the chemical composition of milk (fat, protein, lactase), or bacteriology (colony forming units, CFU). This study's results provide some evidence of the effects of nutritional programming events on the milk's bioactive components.

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Whole-Genome Bisulfite Sequencing analysis of milk samples from Assaf ewes subjected to nutritional challenge and controls

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