Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

CRAB

ABSTRACT: Genomic characterization of carbapenem-resistant Acinetobacter baumannii in mechanically ventilated COVID-19 patients and role of IPC measures in reducing its circulation during the second wave of SARS-CoV-2 pandemic in Milan, Italy

PROVIDER: PRJEB57719 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR10500712_1.fastq.gz	Fastqsanger.gz
	ERR10500712_2.fastq.gz	Fastqsanger.gz
	ERR10500713_1.fastq.gz	Fastqsanger.gz
	ERR10500713_2.fastq.gz	Fastqsanger.gz
	ERR10500714_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Tracheal aspirate RNA sequencing identifies distinct immunological features of COVID-19 ARDS

Project description:We compared differential gene expression in tracheal aspirates collected mechanically ventilated subjects with COVID-19 ARDS to gene expression in tracheal aspirates from: 1) subjects with ARDS from other casues and 2) mechanically ventilated controls without evidence of pulmonary disease.

2020-12-18 | GSE163426 | GEO

Project description:Airway comparison in mechanically ventilated children

| PRJNA534077 | ENA

3d734370-7e08-44c9-b8ca-ba0c29c086e7 - samples

Project description:Single-cell RNA sequencing of 43 bronchoalveolar lavage fluid (BALF) samples from 15 CAPA and 22 COVID-19 mechanically ventilated patients.

| EGAD00001011342 | EGA

Inhibition of S. pneumoniae by selected sputum samples

Project description:In this experiment several sputum samples from mechanically ventilated patients were tested for their antimicrobial activity. The samples were harvested and digested with trypsin and measured by mass spectrometry.

2020-04-14 | MSV000085288 | MassIVE

Project description:Metagenomic Identification of Severe Pneumonia Pathogens in Mechanically-Ventilated Patients

| PRJNA554461 | ENA

Project description:Pseudomonas aeruginosa in mechanically ventilated patients with ventilator-associated pneumonia

| PRJNA638217 | ENA

Aerodigestive tract microbiota

Project description:Characterization of the aerodigestive tract microbiota in mechanically ventilated children

| PRJNA690067 | ENA

Project description:Comparison of gastric and tracheal aspirates from mechanically ventilated children

| PRJNA508231 | ENA

Lung ventilation

Project description:This project focuses both on the separate and combined effects of large tidal volume ventilation and hyperoxia on gene expression in the lungs of anesthetized rats. Rats were either mechanically or spontaneously ventilated at either 21 or 100% oxygen and expression levels were evaluated on RG_U34 GeneChips. Keywords: other

2003-07-16 | GSE489 | GEO

Genome-wide DNA access sites in ventilated preterm lamb lungs [ATAC-seq]

Project description:Purpose: ATAC-seq was performed on preterm lambs that were ventilated by invasive mechanical ventilation or noninvasive respiratory support utilizing a mask and compared to gestation-age-matched preterm lambs that were not ventilated and naturally delivered term lambs. Methods: Lung chromatin access profiles were generated for: 1) Unventilated preterm lamb, 2) preterm lambs delivered at gd131 and intubated and mechanically ventilated for 3 days, 3) preterm lambs delivered at gd131 and not intubated and resuscitated by placing a face mask over the nose and mouth and controlling O2 delivery via a computer-controlled electronic blower device, 4) unventilated naturally delivered full-term lambs. Results: Using an optimized data analysis workflow, we mapped between 76 and 96 million sequence reads per sample to the sheep genome Conclusions: Our study represents the first detailed analysis of ventilated preterm lung chromatin access, with biologic replicates, generated by ATAC-seq

2021-06-30 | GSE163807 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data