Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bulk RNA-seq of germinating Arabidopsis thaliana seeds with and without protoplasting

ABSTRACT: bulk RNA-seq of germinating Arabidopsis thaliana seeds with and without protoplasting

PROVIDER: PRJEB58795 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

bulk RNA-seq of wild-type and mutant germinating Arabidopsis thaliana seeds

Project description:bulk RNA-seq of wild-type and mutant germinating Arabidopsis thaliana seeds

| PRJEB67556 | ENA

bulk RNA-seq of germinating Arabidopsis thaliana seeds with and without protoplasting

Project description:This experiment aims to determine the genes that respond to protoplasting treatment in a time course of Arabidopsis seed germination, so that they can be filtered out from single-cell RNA-seq analysis which involves protoplasting.

2023-01-11 | E-MTAB-12521 | biostudies-arrayexpress

Dual-transcritome analysis of germinating Arabidopsis seeds in response to necrotrophic fungus Alternaria brassicicola

Project description:We analyzed dual-transcriptome changes in germinating Arabidopsis seeds at three development stages (3, 6 and 10 days after sowing) with or without Alternaria brassicicola. Differentailly expressed genes were identified from both seed and fungus.

2022-04-12 | GSE199977 | GEO

Effect of uniconazole on wt and pkl mutant germinating seeds

Project description:Relative expression data from germinating seeds of Columbia (wt), the pkl mutant (pkl), Columbia plus uniconazole-P (Uwt) and the pkl-mutant plus uniconazole-P (Upkl).

2008-06-27 | GSE11852 | GEO

Single-cell RNA-seq of germinating Arabidopsis thaliana seeds

Project description:Single-cell RNA-seq of germinating Arabidopsis thaliana seeds

| PRJEB59122 | ENA

Identifying conserved and novel miRNAs in germinating seeds of Glycine max using deep sequencing

Project description:MicroRNAs (miRNAs) are important post-transcriptional regulators of plant development. In soybean (Glycine max), an important edible oil crop, valuable lipids are synthesized and stored in the cotyledons during embryogenesis .This storage lipids are used as energy source of the emerging seeds, during the germination procces. Until now, there are no microRNAs related to lipid metabolism in soybean or any other plant. This work aims to describe the miRNAome of germinating seeds of B. napus by identifying plant-conserved and novel miRNAs and comparing miRNA abundance in mature versus germinating seeds. A total of 183 familes were detected through a computational analysis of a large number of reads obtained from deep sequencing from two small RNA libraries of (i) pooled germintaing seeds stages and (ii) mature soybean seeds. We have found 39 new mirna precursors which produce 41 new mature forms. The present work also have identified isomiRNAs and mirnas offset (moRNAs). This work presents a comprehensive study of the miRNA transcriptome of soybean germinating seeds and will provide a basis for future research on more targeted studies of individual miRNAs and their functions in lipid consumption in development soybean seeds.

2015-05-25 | GSE38373 | GEO

Identifying conserved and novel miRNAs in germinating seeds of Glycine max using deep sequencing

2015-05-25 | E-GEOD-38373 | biostudies-arrayexpress

Samples from germinating seeds and their exudates under bacterial and ECM treatments

Project description:Samples from germinating seeds and their exudates (muskmelon) under bacterial and extracellular matrix treatments

| MSV000088139 | MassIVE

Proteomes of germinating soybean seeds

Project description:In this project, the proteomes of cotyledon, hypocotyl and radicle of germinating soybean seeds were studied using LC-MS/MS analysis.

2020-09-01 | PXD021259 |

Effect of uniconazole-P on wt and pkl mutant germinating seeds

Project description:Relative expression data from germinating seeds of Columbia (wt), the pkl mutant (pkl), Columbia plus uniconazole-P (Uwt) and the pkl-mutant plus uniconazole-P (Upkl). Each experimental condition (wt, pkl, Uwt and Upkl) has four true replicates for a total of 16 chips. Keywords = CHD3 Keywords = chromatin remodeling factors Keywords = developmental transition Keywords = embryo Keywords = seed germination Keywords: other

2003-07-07 | GSE277 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data