Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Evolution of XDR TB in a single patient: genomics

ABSTRACT: Illumina HiSeq 2000 1x50 bp and Illumina MiSeq 2x150 bp reads from nine isolates from the same patient

PROVIDER: PRJEB5899 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR459440_1.fastq.gz	Fastqsanger.gz
	ERR459440_2.fastq.gz	Fastqsanger.gz
	ERR459441_1.fastq.gz	Fastqsanger.gz
	ERR459441_2.fastq.gz	Fastqsanger.gz
	ERR459442_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 27

Similar Datasets

Evolution of XDR TB from a susceptible ancestor: transcriptomics

Project description:Illumina 50 bp SE RNA-seq reads of four isolates from same patient: susceptible, MDR and pre-XDR

| PRJEB5865 | ENA

RNA-seq from knee and hip osteoarthritis cartilage

Project description:In total, 70 samples on macroscopically preserved and lesioned OA cartilage from the same patient was taken for RNA-seq. Subsequently, paired-end 2×100 bp RNA library sequencing (Illumina TruSeq RNA Library Prep Kit, Illumina HiSeq 2000 and TruSeq Stranded Total RNA LT Sample Prep Kit, Illumina HiSeq 4000) was performed.

2019-01-07 | E-MTAB-7313 | biostudies-arrayexpress

Transcriptomic analysis of A. thaliana roots in response to carbenicillin

Project description:A. thaliana plants were grown in 1/2 MS medium in the presence of carbenicillin (10 µg·mL-1) for 1 or 7 days and RNA from their roots extracted and sequenced in Illumina HiSeq 2000/5000 (2x50 bp).

2018-07-19 | GSE113243 | GEO

Pilot transcriptomic study- Sybiopop: A systems biology approach to improve poplar biorefinery feedstock by deciphering the genetic architecture of lignocellulosic biomass production and quality

Project description:jc2013_sybiopop_2014-pilot transcriptomic study - Which genes affect biomass yield in poplar? RNA was extracted from young differentiating xylem and cambium collected on 24 4-year-old trees trialed in a common garden experiment at INRA Orléans. The trees corresponded to corresponding to 2 replicates of 12 genotypes from 6 natural populations. After RNA quantification, the RNA from xylem and cambium from the same tree were pooled and subjected to high-throughput sequencing on an Illumina HiSeq 2000 using 100 bp paired-ends reads indexing runs. All the samples were sequenced on one Illumina lane, yielding around 20 million of single-reads per sample.

2018-10-23 | GSE117346 | GEO

iCLIP of GFP fusion proteins

Project description:HeLa cells were cultured in DMEM, supplemented with 10% (v/v) FCS and penicillin/streptomycin under 5% CO2 at 37C. For iCLIP, HeLa cells expressing GFP fusion proteins were induced with doxycycline to adjust the level of recombinant protein to the level of the endogenous counterpart and irradiated with 150 mJ/cm2 UV light (254 nm). The iCLIP cDNA libraries were sequenced with 50 bp on an Illumina HiSeq 2000 instrument. RNASeq was performed as a control with 50 bp paired-end on an Illumina HiSeq 2000 instrument.

2016-07-28 | E-MTAB-4215 | biostudies-arrayexpress

NGBG21

Project description:Pyrosequencing Analysis of Dongjin using Illumina HiSeq 2000

| PRJEB3152 | ENA

stu_G104

Project description:Pyrosequencing Analysis of D052 using Illumina HiSeq 2000

| PRJEB7762 | ENA

stu_G107

Project description:Pyrosequencing Analysis of D120 using Illumina HiSeq 2000

| PRJEB7765 | ENA

Project description:Pyrosequencing Analysis of Heugjinju using Illumina HiSeq 2000

| PRJEB8952 | ENA

Project description:Pyrosequencing Analysis of Heugseol using Illumina HiSeq 2000

| PRJEB8953 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data