Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

IlDenPini

ABSTRACT: Dendrolimus pini (pine lappet)

PROVIDER: PRJEB60712 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR11029700.fastq.gz	Fastqsanger.gz
	ERR11040191_1.fastq.gz	Fastqsanger.gz
	ERR11040191_2.fastq.gz	Fastqsanger.gz
	ERR12765139_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

ilDenPini1

Project description:Dendrolimus pini (pine lappet) genome assembly, ilDenPini1

| PRJEB60896 | ENA

ilDenPini

Project description:Dendrolimus pini (pine lappet), genomic and transcriptomic data

| PRJEB60711 | ENA

ilDenPini1 alternate haplotype

Project description:Dendrolimus pini (pine lappet) genome assembly, ilDenPini1, alternate haplotype

| PRJEB60897 | ENA

Dendrolimus pini

Project description:Dendrolimus pini overview

| PRJNA945968 | ENA

Defense Response to Caterpillar Feeding Stress in Wild Pinus tabuliformis Unveiled by Quantitative Integrated Proteomic and Phosphoproteomic Analyses

Project description:To study the alteration pattern and defensive response mechanism triggered by herbivorous feeding stimuli under natural conditions, we built a biological model of the interrelationship between the Chinese pine (Pinus tabuliformis Carr.) and the Chinese pine caterpillar (Dendrolimus tabulaeformis Tsai et Liu) within their native habitat. We integrated proteomic and phosphoproteomic data, normalized the results, and combined them with bioinformatics to evaluate and analyze variations in phosphoproteomics in pine needles' response to the caterpillar's feeding stimulus. We systematically identified differentially significant phosphorylated proteins implicated in the pine's defense mechanism against caterpillar stress. Furthermore, we predicted upstream kinases of phosphorylation sites and their activities. Similarly, through an analysis of the Motif patterns of phosphorylated proteins, Mfuzz clustering of phosphorylation sites, kinase regulatory networks and functional modules of phosphorylated protein interaction networks in response to stress within pine, we can investigate the mechanisms behind resistance formation and regulation of caterpillar feeding incentives in pine. The identification results of partially phosphorylated proteins were additionally confirmed through PRM technology. Furthermore, genes upstream of differentially expressed proteins were validated through RT-qPCR detection.

2024-01-16 | PXD022064 | Pride

ilDenPini1.Wolbachia_sp_1

Project description:Wolbachia endosymbiont (group A) of Dendrolimus pini genome assembly, ilDenPini1.Wolbachia_sp_1

| PRJEB74874 | ENA

ilDenPini1.Wolbachia_sp_2

Project description:Wolbachia endosymbiont (group B) of Dendrolimus pini genome assembly, ilDenPini1.Wolbachia_sp_2

| PRJEB74820 | ENA

Dendrolimus houi isolate:FUJIAN-N1

Project description:Chromosome-scale Genome Assembly of An Important Coniferous Defoliator from Pine Forests, Dendrolimus houi

| PRJNA1090009 | ENA

RNA-seq based in vivo transcriptomes of pine trees inoculated with pinewood nematode under the enhanced resistance state

Project description:Bursaphelenchus xylophilus (pinewood nematode, PWN) is a causal agent of pine wilt disease and results in economic and environmental losses in pine forests. The establishment of systemic acquired resistance (SAR) provides positive capacities to control PWN. We selected two SAR elicitors, acibenzolar-S-methyl (ASM) and methyl salicylic acid (MeSA), which effectively inhibited disease symptoms on PWN-infected pine trees. To understand dynamic interactions between pine host and PWN under SAR state, we characterized in vivo transcriptomes of pine trees infected by B. xylophilus according to the ASM and MeSA treatment. After distilled water treatment, pine trees infected by B. xylophilus was used as a negative control.

2020-11-02 | GSE154134 | GEO

RNA-seq based in vivo transcriptomes of pine trees inoculated with pinewood nematode under Bacillus subtilis JCK-1398 treatment

Project description:Bursaphelenchus xylophilus (pinewood nematode, PWN) is the causal agent of pine wilt disease, causing economic and environmental losses in pine forests. The establishment of systemic acquired resistance (SAR) offers positive prospects for PWN control. We chose Bacillus subtilis JCK-1398, which effectively mitigated disease symptoms in PWN-infected pine trees. To elucidate the molecular responses involved in increased SAR according to B. subtilis JCK-1398 treatment, we characterized the in vivo transcriptomes of pine trees infected by PWN with B. subtilis JCK-1398 treatment. Additionally, pine trees infected by PWN after Tween20 treatment were used as a negative control.

2024-02-15 | GSE255343 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data