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IkSiaFuli

ABSTRACT: Sialis fuliginosa, genomic and transcriptomic data

PROVIDER: PRJEB62621 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	ERR11483522.fastq.gz	Fastqsanger.gz
	ERR11496096_1.fastq.gz	Fastqsanger.gz
	ERR11496096_2.fastq.gz	Fastqsanger.gz
	ERR11496097_1.fastq.gz	Fastqsanger.gz
	ERR11496097_2.fastq.gz	Fastqsanger.gz

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Epigenetic variation between urban and rural populations of Darwin’s finches

Project description:The molecular basis of evolutionary change is assumed to be genetic variation. However, growing evidence suggests that epigenetic mechanisms, such as DNA methylation, may also be involved in evolutionary change. An important first step in evaluating this hypothesis is to test for the presence of epigenetic variation between natural populations living under different environmental conditions. In the current study we explored variation between populations of Darwin’s finches living in adjacent “urban” and “rural” environments on Santa Cruz Island in the Galápagos. We tested for morphological, genetic, and epigenetic differences between the urban and rural populations of each of two species of ground finches, Geospiza fortis and G. fuliginosa. Using data collected from more than 1000 birds, we found significant morphological differences between populations of G. fortis, but not G. fuliginosa. We did not find genetic differences between populations of either species, based on comparisons of copy number variation (CNV). In contrast, we did find epigenetic differences between the urban and rural populations of both species, based on DNA methylation analysis. We explored genomic features and gene associations of the differentially methylated regions (DMR), as well as their possible functional significance. In summary, our study documents local population epigenetic variation within species of Darwin’s finches.

2017-01-07 | GSE87825 | GEO

Sialia sialis strain:NA

Project description:Sialia sialis

| PRJNA968760 | ENA

Petrochelidon fuliginosa strain:NA

Project description:Petrochelidon fuliginosa

| PRJNA964886 | ENA

Asemospiza fuliginosa

Project description:Asemospiza fuliginosa

| PRJNA920073 | ENA