Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

16S Swedish acid sulfate soils regional microbial communities

ABSTRACT: Regional variation in Swedish acid sulfate soil microbial communities is influenced by temperature, grain size, and organic matter content

PROVIDER: PRJEB63388 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	ERR11596800_1.fastq.gz	Fastqsanger.gz
	ERR11596800_2.fastq.gz	Fastqsanger.gz
	ERR11596900_1.fastq.gz	Fastqsanger.gz
	ERR11596900_2.fastq.gz	Fastqsanger.gz
	ERR11596801_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 322

Similar Datasets

16S Swedish acid sulfate soils regional microbial communities

Project description:16S Regional variation in Swedish acid sulfate soil microbial communities

| PRJEB63530 | ENA

Swedish AS soil regional incubations comparisons

Project description:Swedish AS soil regional incubations comparisons

| PRJEB76185 | ENA

acid sulfate soils

Project description:acid sulfate soil Raw sequence reads

| PRJNA1016489 | ENA

Swedish freshwater sponges

Project description:Swedish freshwater Porifera

| PRJEB49143 | ENA

Metagenomes of Swedish lakes

Project description:Metagenomes of Swedish lakes

| PRJEB54817 | ENA

STEC from Swedish cervids

Project description:STEC from Swedish cervids

| PRJEB53334 | ENA

Swedish STPs

Project description:Metagenomic characterization of three Swedish sewage treatment plants

| PRJEB14051 | ENA

Combining P and Zn fertilization to enhance yield, grain Zn availability and protein profile in maize grown on Mediterranean soils

Project description:Alkaline soils such as those found in some Mediterranean areas typically have a low phosphorus (P) and zinc (Zn) phytoavailability that detracts from plant growth and yield. We examined the effects of P and Zn fertilization individually and in combination on growth, yield and grain protein content in maize grown in pots filled with three Mediterranean soils. P and Zn translocation was impaired, and yield reduced by 8–85%, in plants treated with Zn or P alone. In contrast, joint fertilization with P and Zn enhanced translocation to grain and nutrient use efficiency, thereby increasing plant growth, yield (31–121%) and grain Zn availability. Fertilization with P or Zn also influenced the abundance of specific proteins affecting grain quality (viz., storage, lys-rich and cell wall proteins), which were more abundant in mature grains from plants fertilized with Zn alone and, to a lesser extent, P + Zn.

2021-09-09 | PXD021503 | Pride

Salmonella in Swedish wild boars

Project description:Salmonella in Swedish wild boars

| PRJEB52521 | ENA

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

Project description:In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thiosulfate, and pyruvate with limiting sulfate, relative to growth in standard lactate/sulfate condition. Growth with hydrogen/sulfate showed the largest number of differently expressed genes and the largest changes in expression levels. The most up-regulated energy metabolism genes were those coding for the periplasmic [NiFeSe] hydrogenase, followed by the Ech hydrogenase, and the most down-regulated were genes coding for the Coo hydrogenase. The results point to the involvement of formate cycling and the ethanol pathway during growth on hydrogen, whereas there is evidence for CO cycling during growth on lactate and pyruvate, but not on H2. Growth with thiosulfate showed the hallmarks of a reduced energy status of the cells with down regulation of the ATP synthase and the Qmo and Dsr complexes., whereas growth with pyruvate showed the smallest differences but an increased role for the Ech hydrogenase.that in this case functions in reverse from the case of growth with H2. The multiple periplasmic hydrogenases and formate dehydrogenases, do not display the same regulation pattern showing that their metabolic roles are not totally interchangeable. This result together with the observation that several genes coding for proteins that have not been biochemically characterised were considerably affected in this study, reveals a more complex energy metabolism than previously considered and provides guidance for further studies. Keywords: Growth protocol

2008-05-31 | GSE8072 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data